Hb_000640_270

Information

Type -
Description -
Location Contig640: 237693-243980
Sequence    

Annotation

kegg
ID rcu:RCOM_1346520
description pectinesterase, putative (EC:3.1.1.11)
nr
ID XP_012083804.1
description PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase 30 [Jatropha curcas]
swissprot
ID Q3E9D3
description Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1
trembl
ID B9RNC0
description Pectinesterase OS=Ricinus communis GN=RCOM_1346520 PE=3 SV=1
Gene Ontology
ID GO:0016788
description probable pectinesterase 29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_270 0.0 - - PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase 30 [Jatropha curcas]
2 Hb_117464_010 0.0323350848 - - PREDICTED: flavone 3'-O-methyltransferase 1-like [Jatropha curcas]
3 Hb_008160_020 0.0385176728 - - PREDICTED: AT-hook motif nuclear-localized protein 23-like isoform X1 [Jatropha curcas]
4 Hb_010839_070 0.0470484307 - - uncharacterized protein LOC100810725 [Glycine max]
5 Hb_001081_020 0.0661454785 - - Cytochrome P450 76C2 [Triticum urartu]
6 Hb_071381_010 0.0846075667 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
7 Hb_039342_030 0.1007592746 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000813_120 0.1015719273 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
9 Hb_183700_010 0.107937339 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_003010_040 0.1082404581 - - hypothetical protein AALP_AA7G248200 [Arabis alpina]
11 Hb_001571_010 0.1102067574 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
12 Hb_003121_020 0.1139136822 - - secretory peroxidase PX3 [Manihot esculenta]
13 Hb_014113_010 0.1174603999 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
14 Hb_031862_240 0.1216332371 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
15 Hb_000317_210 0.1229272456 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39 [Jatropha curcas]
16 Hb_006196_020 0.1266490968 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
17 Hb_004586_080 0.1313072381 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
18 Hb_001047_250 0.1327307007 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
19 Hb_000327_300 0.1332354588 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
20 Hb_006478_190 0.13464614 - - lipid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000640_270 Hb_000640_270 Hb_117464_010 Hb_117464_010 Hb_000640_270--Hb_117464_010 Hb_008160_020 Hb_008160_020 Hb_000640_270--Hb_008160_020 Hb_010839_070 Hb_010839_070 Hb_000640_270--Hb_010839_070 Hb_001081_020 Hb_001081_020 Hb_000640_270--Hb_001081_020 Hb_071381_010 Hb_071381_010 Hb_000640_270--Hb_071381_010 Hb_039342_030 Hb_039342_030 Hb_000640_270--Hb_039342_030 Hb_117464_010--Hb_008160_020 Hb_117464_010--Hb_001081_020 Hb_117464_010--Hb_010839_070 Hb_117464_010--Hb_071381_010 Hb_117464_010--Hb_039342_030 Hb_008160_020--Hb_001081_020 Hb_008160_020--Hb_071381_010 Hb_008160_020--Hb_010839_070 Hb_008160_020--Hb_039342_030 Hb_001571_010 Hb_001571_010 Hb_010839_070--Hb_001571_010 Hb_010839_070--Hb_071381_010 Hb_010839_070--Hb_001081_020 Hb_001081_020--Hb_071381_010 Hb_006196_020 Hb_006196_020 Hb_001081_020--Hb_006196_020 Hb_071381_010--Hb_001571_010 Hb_000405_040 Hb_000405_040 Hb_071381_010--Hb_000405_040 Hb_016172_010 Hb_016172_010 Hb_039342_030--Hb_016172_010 Hb_039342_030--Hb_006196_020 Hb_008705_070 Hb_008705_070 Hb_039342_030--Hb_008705_070 Hb_042664_010 Hb_042664_010 Hb_039342_030--Hb_042664_010 Hb_002615_050 Hb_002615_050 Hb_039342_030--Hb_002615_050 Hb_000160_230 Hb_000160_230 Hb_039342_030--Hb_000160_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0278198 0.00781138 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.149841 0

CAGE analysis