Hb_010839_070

Information

Type -
Description -
Location Contig10839: 58665-59027
Sequence    

Annotation

kegg
ID gmx:100810725
description PRA1 family protein F2-like
nr
ID NP_001241494.1
description uncharacterized protein LOC100810725 [Glycine max]
swissprot
ID -
description -
trembl
ID A0A0B2S744
description PRA1 family protein F2 OS=Glycine soja GN=glysoja_001031 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010839_070 0.0 - - uncharacterized protein LOC100810725 [Glycine max]
2 Hb_000640_270 0.0470484307 - - PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase 30 [Jatropha curcas]
3 Hb_117464_010 0.0492682404 - - PREDICTED: flavone 3'-O-methyltransferase 1-like [Jatropha curcas]
4 Hb_008160_020 0.0541846275 - - PREDICTED: AT-hook motif nuclear-localized protein 23-like isoform X1 [Jatropha curcas]
5 Hb_001571_010 0.0647303775 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
6 Hb_071381_010 0.0656939116 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
7 Hb_001081_020 0.0911625551 - - Cytochrome P450 76C2 [Triticum urartu]
8 Hb_003121_020 0.0914693706 - - secretory peroxidase PX3 [Manihot esculenta]
9 Hb_000317_210 0.1078794694 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39 [Jatropha curcas]
10 Hb_039342_030 0.1102493682 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000327_300 0.1165656508 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
12 Hb_084495_010 0.1234141745 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Eucalyptus grandis]
13 Hb_004586_080 0.1242792829 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
14 Hb_014113_010 0.1289168016 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
15 Hb_000813_120 0.1308627953 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
16 Hb_006196_020 0.1331562758 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
17 Hb_003010_040 0.1335712716 - - hypothetical protein AALP_AA7G248200 [Arabis alpina]
18 Hb_183700_010 0.1369724161 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_042664_010 0.1412458544 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
20 Hb_099198_010 0.1414945012 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 isoform X2 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_010839_070 Hb_010839_070 Hb_000640_270 Hb_000640_270 Hb_010839_070--Hb_000640_270 Hb_117464_010 Hb_117464_010 Hb_010839_070--Hb_117464_010 Hb_008160_020 Hb_008160_020 Hb_010839_070--Hb_008160_020 Hb_001571_010 Hb_001571_010 Hb_010839_070--Hb_001571_010 Hb_071381_010 Hb_071381_010 Hb_010839_070--Hb_071381_010 Hb_001081_020 Hb_001081_020 Hb_010839_070--Hb_001081_020 Hb_000640_270--Hb_117464_010 Hb_000640_270--Hb_008160_020 Hb_000640_270--Hb_001081_020 Hb_000640_270--Hb_071381_010 Hb_039342_030 Hb_039342_030 Hb_000640_270--Hb_039342_030 Hb_117464_010--Hb_008160_020 Hb_117464_010--Hb_001081_020 Hb_117464_010--Hb_071381_010 Hb_117464_010--Hb_039342_030 Hb_008160_020--Hb_001081_020 Hb_008160_020--Hb_071381_010 Hb_008160_020--Hb_039342_030 Hb_001571_010--Hb_071381_010 Hb_001571_010--Hb_117464_010 Hb_001571_010--Hb_008160_020 Hb_001571_010--Hb_000640_270 Hb_003121_020 Hb_003121_020 Hb_001571_010--Hb_003121_020 Hb_071381_010--Hb_001081_020 Hb_000405_040 Hb_000405_040 Hb_071381_010--Hb_000405_040 Hb_006196_020 Hb_006196_020 Hb_001081_020--Hb_006196_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.180976 0.0876819 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.25037 0

CAGE analysis