Hb_000405_040

Information

Type -
Description -
Location Contig405: 74782-82077
Sequence    

Annotation

kegg
ID vvi:100261069
description probable LRR receptor-like serine/threonine-protein kinase At4g08850
nr
ID XP_012067859.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A061FG24
description Receptor protein kinase, putative OS=Theobroma cacao GN=TCM_034915 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000405_040 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
2 Hb_014034_020 0.0770016597 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
3 Hb_000025_250 0.0770885533 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
4 Hb_071381_010 0.0779134577 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
5 Hb_001032_060 0.078970925 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
6 Hb_004254_070 0.0821093467 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
7 Hb_000229_080 0.089638357 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
8 Hb_000500_190 0.0906527476 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
9 Hb_000201_080 0.0919140814 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_001604_140 0.091942818 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
11 Hb_003685_060 0.0920753776 - - PREDICTED: laccase-15 [Jatropha curcas]
12 Hb_126040_020 0.0921452703 - - -
13 Hb_000022_270 0.0922685317 - - conserved hypothetical protein [Ricinus communis]
14 Hb_018709_010 0.0927054677 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
15 Hb_028013_010 0.0935794584 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_009780_060 0.0971258349 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
17 Hb_020141_020 0.097679399 - - -
18 Hb_000446_100 0.0980017653 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
19 Hb_094462_010 0.100818261 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
20 Hb_003188_020 0.1009385665 - - chitinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000405_040 Hb_000405_040 Hb_014034_020 Hb_014034_020 Hb_000405_040--Hb_014034_020 Hb_000025_250 Hb_000025_250 Hb_000405_040--Hb_000025_250 Hb_071381_010 Hb_071381_010 Hb_000405_040--Hb_071381_010 Hb_001032_060 Hb_001032_060 Hb_000405_040--Hb_001032_060 Hb_004254_070 Hb_004254_070 Hb_000405_040--Hb_004254_070 Hb_000229_080 Hb_000229_080 Hb_000405_040--Hb_000229_080 Hb_014034_020--Hb_004254_070 Hb_003188_020 Hb_003188_020 Hb_014034_020--Hb_003188_020 Hb_000500_190 Hb_000500_190 Hb_014034_020--Hb_000500_190 Hb_000446_100 Hb_000446_100 Hb_014034_020--Hb_000446_100 Hb_001301_020 Hb_001301_020 Hb_014034_020--Hb_001301_020 Hb_014034_020--Hb_000025_250 Hb_000025_250--Hb_004254_070 Hb_018709_010 Hb_018709_010 Hb_000025_250--Hb_018709_010 Hb_020141_020 Hb_020141_020 Hb_000025_250--Hb_020141_020 Hb_005464_040 Hb_005464_040 Hb_000025_250--Hb_005464_040 Hb_000563_080 Hb_000563_080 Hb_000025_250--Hb_000563_080 Hb_008160_020 Hb_008160_020 Hb_071381_010--Hb_008160_020 Hb_117464_010 Hb_117464_010 Hb_071381_010--Hb_117464_010 Hb_010839_070 Hb_010839_070 Hb_071381_010--Hb_010839_070 Hb_001571_010 Hb_001571_010 Hb_071381_010--Hb_001571_010 Hb_001081_020 Hb_001081_020 Hb_071381_010--Hb_001081_020 Hb_000419_080 Hb_000419_080 Hb_001032_060--Hb_000419_080 Hb_005747_020 Hb_005747_020 Hb_001032_060--Hb_005747_020 Hb_094462_010 Hb_094462_010 Hb_001032_060--Hb_094462_010 Hb_001032_060--Hb_018709_010 Hb_000022_270 Hb_000022_270 Hb_001032_060--Hb_000022_270 Hb_000488_040 Hb_000488_040 Hb_001032_060--Hb_000488_040 Hb_004254_070--Hb_000446_100 Hb_004254_070--Hb_003188_020 Hb_004254_070--Hb_000500_190 Hb_004254_070--Hb_001301_020 Hb_000229_080--Hb_000500_190 Hb_000229_080--Hb_014034_020 Hb_000229_080--Hb_004254_070 Hb_000563_060 Hb_000563_060 Hb_000229_080--Hb_000563_060 Hb_000229_080--Hb_003188_020 Hb_000229_080--Hb_000446_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0155079 0.00489415 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.271132 0

CAGE analysis