Hb_002553_080

Information

Type transcription factor
Description TF Family: ERF
Location Contig2553: 63990-64397
Sequence    

Annotation

kegg
ID egr:104427847
description ethylene-responsive transcription factor ERF096-like
nr
ID XP_010039174.1
description PREDICTED: ethylene-responsive transcription factor ERF096-like [Eucalyptus grandis]
swissprot
ID Q9LSX0
description Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1
trembl
ID A0A059D1V2
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01537 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf098-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002553_080 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096-like [Eucalyptus grandis]
2 Hb_003085_050 0.0675761626 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
3 Hb_157122_010 0.0749629152 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
4 Hb_002766_040 0.0790414795 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
5 Hb_007735_010 0.0944282368 - - Gibberellin 20 oxidase, putative [Ricinus communis]
6 Hb_001168_080 0.1198544165 - - kinase, putative [Ricinus communis]
7 Hb_005550_070 0.1316253574 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
8 Hb_000101_060 0.1341222043 - - -
9 Hb_004931_060 0.1352000448 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
10 Hb_005846_010 0.1369680351 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
11 Hb_011628_030 0.141683906 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002400_250 0.147191952 - - amino acid binding protein, putative [Ricinus communis]
13 Hb_000905_030 0.1477720665 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
14 Hb_012702_020 0.1479648303 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
15 Hb_008616_020 0.1524704799 - - unnamed protein product [Vitis vinifera]
16 Hb_183700_010 0.1542197257 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_002157_180 0.1556606145 - - separase, putative [Ricinus communis]
18 Hb_001073_020 0.1575424111 - - hypothetical protein CISIN_1g031854mg [Citrus sinensis]
19 Hb_012053_030 0.1578133064 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
20 Hb_014113_010 0.1580944211 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002553_080 Hb_002553_080 Hb_003085_050 Hb_003085_050 Hb_002553_080--Hb_003085_050 Hb_157122_010 Hb_157122_010 Hb_002553_080--Hb_157122_010 Hb_002766_040 Hb_002766_040 Hb_002553_080--Hb_002766_040 Hb_007735_010 Hb_007735_010 Hb_002553_080--Hb_007735_010 Hb_001168_080 Hb_001168_080 Hb_002553_080--Hb_001168_080 Hb_005550_070 Hb_005550_070 Hb_002553_080--Hb_005550_070 Hb_003085_050--Hb_157122_010 Hb_003085_050--Hb_002766_040 Hb_002157_180 Hb_002157_180 Hb_003085_050--Hb_002157_180 Hb_003085_050--Hb_007735_010 Hb_014113_010 Hb_014113_010 Hb_003085_050--Hb_014113_010 Hb_157122_010--Hb_002157_180 Hb_157122_010--Hb_002766_040 Hb_157122_010--Hb_014113_010 Hb_157122_010--Hb_007735_010 Hb_002766_040--Hb_007735_010 Hb_183700_010 Hb_183700_010 Hb_002766_040--Hb_183700_010 Hb_002766_040--Hb_014113_010 Hb_007735_010--Hb_183700_010 Hb_031862_240 Hb_031862_240 Hb_007735_010--Hb_031862_240 Hb_011628_030 Hb_011628_030 Hb_007735_010--Hb_011628_030 Hb_007735_010--Hb_014113_010 Hb_000905_030 Hb_000905_030 Hb_001168_080--Hb_000905_030 Hb_151236_010 Hb_151236_010 Hb_001168_080--Hb_151236_010 Hb_002138_030 Hb_002138_030 Hb_001168_080--Hb_002138_030 Hb_010839_020 Hb_010839_020 Hb_001168_080--Hb_010839_020 Hb_004195_050 Hb_004195_050 Hb_001168_080--Hb_004195_050 Hb_007382_060 Hb_007382_060 Hb_001168_080--Hb_007382_060 Hb_005846_010 Hb_005846_010 Hb_005550_070--Hb_005846_010 Hb_005550_070--Hb_011628_030 Hb_125876_010 Hb_125876_010 Hb_005550_070--Hb_125876_010 Hb_047163_010 Hb_047163_010 Hb_005550_070--Hb_047163_010 Hb_004109_300 Hb_004109_300 Hb_005550_070--Hb_004109_300 Hb_156949_010 Hb_156949_010 Hb_005550_070--Hb_156949_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.470688 0.0635474 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.707795 0

CAGE analysis