Hb_004931_060

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig4931: 69591-70910
Sequence    

Annotation

kegg
ID rcu:RCOM_0608920
description r2r3-myb transcription factor, putative
nr
ID XP_010262320.1
description PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
swissprot
ID P20024
description Myb-related protein Zm1 OS=Zea mays PE=2 SV=1
trembl
ID B9S7K2
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0608920 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein myb4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004931_060 0.0 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
2 Hb_011628_030 0.0710424699 - - conserved hypothetical protein [Ricinus communis]
3 Hb_047163_010 0.0846440066 - - PREDICTED: periaxin-like [Populus euphratica]
4 Hb_186298_010 0.0857391078 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_002917_020 0.0880475773 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
6 Hb_005550_070 0.1011405696 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
7 Hb_059162_010 0.1011967992 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_001596_040 0.1169423689 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
9 Hb_125876_010 0.1190574031 - - unnamed protein product [Vitis vinifera]
10 Hb_002400_250 0.1215527659 - - amino acid binding protein, putative [Ricinus communis]
11 Hb_012053_030 0.1223684546 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
12 Hb_000462_020 0.1262407961 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_000101_050 0.1265075784 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
14 Hb_003086_200 0.1279350848 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
15 Hb_005846_010 0.1285739016 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
16 Hb_000300_570 0.1301915313 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
17 Hb_003581_240 0.1310683223 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_004109_300 0.1323069079 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
19 Hb_006446_060 0.1350859558 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
20 Hb_002553_080 0.1352000448 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_004931_060 Hb_004931_060 Hb_011628_030 Hb_011628_030 Hb_004931_060--Hb_011628_030 Hb_047163_010 Hb_047163_010 Hb_004931_060--Hb_047163_010 Hb_186298_010 Hb_186298_010 Hb_004931_060--Hb_186298_010 Hb_002917_020 Hb_002917_020 Hb_004931_060--Hb_002917_020 Hb_005550_070 Hb_005550_070 Hb_004931_060--Hb_005550_070 Hb_059162_010 Hb_059162_010 Hb_004931_060--Hb_059162_010 Hb_011628_030--Hb_047163_010 Hb_011628_030--Hb_059162_010 Hb_125876_010 Hb_125876_010 Hb_011628_030--Hb_125876_010 Hb_011628_030--Hb_005550_070 Hb_002743_030 Hb_002743_030 Hb_011628_030--Hb_002743_030 Hb_047163_010--Hb_059162_010 Hb_047163_010--Hb_125876_010 Hb_047163_010--Hb_002743_030 Hb_004109_300 Hb_004109_300 Hb_047163_010--Hb_004109_300 Hb_126077_020 Hb_126077_020 Hb_186298_010--Hb_126077_020 Hb_186298_010--Hb_002917_020 Hb_000265_010 Hb_000265_010 Hb_186298_010--Hb_000265_010 Hb_002716_080 Hb_002716_080 Hb_186298_010--Hb_002716_080 Hb_001863_460 Hb_001863_460 Hb_186298_010--Hb_001863_460 Hb_002917_020--Hb_005550_070 Hb_002917_020--Hb_011628_030 Hb_002917_020--Hb_047163_010 Hb_001951_090 Hb_001951_090 Hb_002917_020--Hb_001951_090 Hb_005846_010 Hb_005846_010 Hb_005550_070--Hb_005846_010 Hb_005550_070--Hb_125876_010 Hb_005550_070--Hb_047163_010 Hb_005550_070--Hb_004109_300 Hb_156949_010 Hb_156949_010 Hb_005550_070--Hb_156949_010 Hb_041769_010 Hb_041769_010 Hb_059162_010--Hb_041769_010 Hb_004185_040 Hb_004185_040 Hb_059162_010--Hb_004185_040 Hb_059162_010--Hb_002743_030 Hb_004195_040 Hb_004195_040 Hb_059162_010--Hb_004195_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.89805 0.209851 0.185511 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.31611 0

CAGE analysis