Hb_001863_460

Information

Type transcription factor
Description TF Family: MYB
Location Contig1863: 384787-386091
Sequence    

Annotation

kegg
ID pop:POPTR_0005s17080g
description POPTRDRAFT_559105; hypothetical protein
nr
ID XP_012067874.1
description PREDICTED: protein ODORANT1 [Jatropha curcas]
swissprot
ID Q8GWP0
description Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1
trembl
ID A0A067KYV4
description MYB family protein OS=Jatropha curcas GN=JCGZ_15788 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb39-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_460 0.0 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
2 Hb_004136_050 0.1005576973 - - -
3 Hb_186298_010 0.1211197371 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_126077_020 0.1300926263 - - Kinase family protein with leucine-rich repeat domain [Theobroma cacao]
5 Hb_002917_020 0.1372943881 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
6 Hb_002843_010 0.1389295329 - - hypothetical protein EUGRSUZ_H04984, partial [Eucalyptus grandis]
7 Hb_004931_060 0.1400350841 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
8 Hb_002003_020 0.1400985398 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
9 Hb_011970_040 0.1453569723 - - conserved hypothetical protein [Ricinus communis]
10 Hb_022998_010 0.1462937568 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_003031_030 0.1532284836 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
12 Hb_001157_150 0.1566597205 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
13 Hb_002716_080 0.1573270843 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
14 Hb_012395_070 0.1577201471 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
15 Hb_000265_010 0.1581802105 - - amino acid transporter, putative [Ricinus communis]
16 Hb_017866_020 0.1594130458 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
17 Hb_005663_050 0.1595403374 - - amino acid transporter, putative [Ricinus communis]
18 Hb_001663_100 0.1631422385 - - -
19 Hb_000057_010 0.1632136737 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
20 Hb_003119_070 0.1642949484 - - Phytosulfokine receptor precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001863_460 Hb_001863_460 Hb_004136_050 Hb_004136_050 Hb_001863_460--Hb_004136_050 Hb_186298_010 Hb_186298_010 Hb_001863_460--Hb_186298_010 Hb_126077_020 Hb_126077_020 Hb_001863_460--Hb_126077_020 Hb_002917_020 Hb_002917_020 Hb_001863_460--Hb_002917_020 Hb_002843_010 Hb_002843_010 Hb_001863_460--Hb_002843_010 Hb_004931_060 Hb_004931_060 Hb_001863_460--Hb_004931_060 Hb_001283_010 Hb_001283_010 Hb_004136_050--Hb_001283_010 Hb_002003_020 Hb_002003_020 Hb_004136_050--Hb_002003_020 Hb_017866_020 Hb_017866_020 Hb_004136_050--Hb_017866_020 Hb_005663_050 Hb_005663_050 Hb_004136_050--Hb_005663_050 Hb_000057_010 Hb_000057_010 Hb_004136_050--Hb_000057_010 Hb_186298_010--Hb_004931_060 Hb_186298_010--Hb_126077_020 Hb_186298_010--Hb_002917_020 Hb_000265_010 Hb_000265_010 Hb_186298_010--Hb_000265_010 Hb_002716_080 Hb_002716_080 Hb_186298_010--Hb_002716_080 Hb_034342_010 Hb_034342_010 Hb_126077_020--Hb_034342_010 Hb_003556_060 Hb_003556_060 Hb_126077_020--Hb_003556_060 Hb_022998_010 Hb_022998_010 Hb_126077_020--Hb_022998_010 Hb_001424_080 Hb_001424_080 Hb_126077_020--Hb_001424_080 Hb_001663_100 Hb_001663_100 Hb_126077_020--Hb_001663_100 Hb_002917_020--Hb_004931_060 Hb_005550_070 Hb_005550_070 Hb_002917_020--Hb_005550_070 Hb_011628_030 Hb_011628_030 Hb_002917_020--Hb_011628_030 Hb_047163_010 Hb_047163_010 Hb_002917_020--Hb_047163_010 Hb_001951_090 Hb_001951_090 Hb_002917_020--Hb_001951_090 Hb_002272_160 Hb_002272_160 Hb_002843_010--Hb_002272_160 Hb_002374_110 Hb_002374_110 Hb_002843_010--Hb_002374_110 Hb_007432_050 Hb_007432_050 Hb_002843_010--Hb_007432_050 Hb_127743_030 Hb_127743_030 Hb_002843_010--Hb_127743_030 Hb_007163_020 Hb_007163_020 Hb_002843_010--Hb_007163_020 Hb_002671_110 Hb_002671_110 Hb_002843_010--Hb_002671_110 Hb_004931_060--Hb_011628_030 Hb_004931_060--Hb_047163_010 Hb_004931_060--Hb_005550_070 Hb_059162_010 Hb_059162_010 Hb_004931_060--Hb_059162_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.019858 0.297644 0.0305361 0.0614711 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.430096 0

CAGE analysis