Hb_007163_020

Information

Type transcription factor
Description TF Family: bHLH
Location Contig7163: 46469-48412
Sequence    

Annotation

kegg
ID rcu:RCOM_0187390
description DNA binding protein, putative
nr
ID XP_002528891.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9LSL1
description Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1 SV=1
trembl
ID B9SSC2
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0187390 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh93-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55450: 46700-47561
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007163_020 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_007328_040 0.0978279016 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Nelumbo nucifera]
3 Hb_002671_110 0.1267159119 - - PREDICTED: remorin-like [Jatropha curcas]
4 Hb_001640_020 0.126977409 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
5 Hb_000057_010 0.1333396656 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
6 Hb_002843_010 0.1340506206 - - hypothetical protein EUGRSUZ_H04984, partial [Eucalyptus grandis]
7 Hb_005218_070 0.1373819287 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
8 Hb_002475_020 0.1410040246 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
9 Hb_002900_070 0.1463792827 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000302_060 0.1487791738 - - unnamed protein product [Vitis vinifera]
11 Hb_005228_170 0.1497357635 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
12 Hb_005663_050 0.1503245657 - - amino acid transporter, putative [Ricinus communis]
13 Hb_002204_030 0.1521956263 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
14 Hb_166813_010 0.1556295485 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
15 Hb_002556_020 0.1559239437 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
16 Hb_009515_010 0.1564430732 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
17 Hb_000951_030 0.1579801721 - - kinase, putative [Ricinus communis]
18 Hb_000141_230 0.1580901512 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
19 Hb_002081_040 0.1610291003 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
20 Hb_002422_040 0.1628529188 - - hypothetical protein POPTR_0016s02350g [Populus trichocarpa]

Gene co-expression network

sample Hb_007163_020 Hb_007163_020 Hb_007328_040 Hb_007328_040 Hb_007163_020--Hb_007328_040 Hb_002671_110 Hb_002671_110 Hb_007163_020--Hb_002671_110 Hb_001640_020 Hb_001640_020 Hb_007163_020--Hb_001640_020 Hb_000057_010 Hb_000057_010 Hb_007163_020--Hb_000057_010 Hb_002843_010 Hb_002843_010 Hb_007163_020--Hb_002843_010 Hb_005218_070 Hb_005218_070 Hb_007163_020--Hb_005218_070 Hb_007328_040--Hb_001640_020 Hb_002900_070 Hb_002900_070 Hb_007328_040--Hb_002900_070 Hb_000441_170 Hb_000441_170 Hb_007328_040--Hb_000441_170 Hb_002475_020 Hb_002475_020 Hb_007328_040--Hb_002475_020 Hb_098795_010 Hb_098795_010 Hb_007328_040--Hb_098795_010 Hb_005228_170 Hb_005228_170 Hb_002671_110--Hb_005228_170 Hb_000238_060 Hb_000238_060 Hb_002671_110--Hb_000238_060 Hb_002671_110--Hb_005218_070 Hb_000237_150 Hb_000237_150 Hb_002671_110--Hb_000237_150 Hb_001405_100 Hb_001405_100 Hb_002671_110--Hb_001405_100 Hb_002081_040 Hb_002081_040 Hb_002671_110--Hb_002081_040 Hb_001640_020--Hb_000057_010 Hb_004136_050 Hb_004136_050 Hb_001640_020--Hb_004136_050 Hb_005663_050 Hb_005663_050 Hb_001640_020--Hb_005663_050 Hb_001640_020--Hb_002843_010 Hb_000057_010--Hb_005218_070 Hb_000057_010--Hb_002671_110 Hb_009515_010 Hb_009515_010 Hb_000057_010--Hb_009515_010 Hb_000057_010--Hb_004136_050 Hb_000334_250 Hb_000334_250 Hb_000057_010--Hb_000334_250 Hb_002272_160 Hb_002272_160 Hb_002843_010--Hb_002272_160 Hb_002374_110 Hb_002374_110 Hb_002843_010--Hb_002374_110 Hb_007432_050 Hb_007432_050 Hb_002843_010--Hb_007432_050 Hb_127743_030 Hb_127743_030 Hb_002843_010--Hb_127743_030 Hb_002843_010--Hb_002671_110 Hb_002204_030 Hb_002204_030 Hb_005218_070--Hb_002204_030 Hb_005218_070--Hb_005228_170 Hb_000302_060 Hb_000302_060 Hb_005218_070--Hb_000302_060 Hb_005218_070--Hb_002475_020 Hb_005218_070--Hb_009515_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.117 14.7663 0.592952 7.63942 0.62806 0.624541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0613284 0 0.0453525 45.2106 0

CAGE analysis