Hb_004136_050

Information

Type -
Description -
Location Contig4136: 29522-30616
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004136_050 0.0 - - -
2 Hb_001283_010 0.0943049055 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
3 Hb_001863_460 0.1005576973 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
4 Hb_002003_020 0.1049808611 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
5 Hb_017866_020 0.1253801538 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
6 Hb_005663_050 0.1312078936 - - amino acid transporter, putative [Ricinus communis]
7 Hb_000057_010 0.1342632497 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
8 Hb_001157_150 0.1342886409 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
9 Hb_126077_020 0.1430909481 - - Kinase family protein with leucine-rich repeat domain [Theobroma cacao]
10 Hb_031954_010 0.1431559708 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000077_460 0.1436030096 - - -
12 Hb_003119_070 0.1472239628 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
13 Hb_000334_250 0.1534524479 - - Polygalacturonase precursor, putative [Ricinus communis]
14 Hb_000141_220 0.1539643048 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
15 Hb_000077_470 0.1542196641 - - PREDICTED: anthranilate N-methyltransferase-like [Jatropha curcas]
16 Hb_003556_060 0.1551560938 - - -
17 Hb_002716_080 0.1555160067 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
18 Hb_004341_010 0.1580494586 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
19 Hb_001640_020 0.1593286351 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
20 Hb_186298_010 0.1603586809 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_004136_050 Hb_004136_050 Hb_001283_010 Hb_001283_010 Hb_004136_050--Hb_001283_010 Hb_001863_460 Hb_001863_460 Hb_004136_050--Hb_001863_460 Hb_002003_020 Hb_002003_020 Hb_004136_050--Hb_002003_020 Hb_017866_020 Hb_017866_020 Hb_004136_050--Hb_017866_020 Hb_005663_050 Hb_005663_050 Hb_004136_050--Hb_005663_050 Hb_000057_010 Hb_000057_010 Hb_004136_050--Hb_000057_010 Hb_000077_460 Hb_000077_460 Hb_001283_010--Hb_000077_460 Hb_031954_010 Hb_031954_010 Hb_001283_010--Hb_031954_010 Hb_001283_010--Hb_017866_020 Hb_001283_010--Hb_002003_020 Hb_004341_010 Hb_004341_010 Hb_001283_010--Hb_004341_010 Hb_186298_010 Hb_186298_010 Hb_001863_460--Hb_186298_010 Hb_126077_020 Hb_126077_020 Hb_001863_460--Hb_126077_020 Hb_002917_020 Hb_002917_020 Hb_001863_460--Hb_002917_020 Hb_002843_010 Hb_002843_010 Hb_001863_460--Hb_002843_010 Hb_004931_060 Hb_004931_060 Hb_001863_460--Hb_004931_060 Hb_002003_020--Hb_017866_020 Hb_019229_020 Hb_019229_020 Hb_002003_020--Hb_019229_020 Hb_002003_020--Hb_000077_460 Hb_001638_110 Hb_001638_110 Hb_002003_020--Hb_001638_110 Hb_017866_020--Hb_000077_460 Hb_013914_020 Hb_013914_020 Hb_017866_020--Hb_013914_020 Hb_000045_180 Hb_000045_180 Hb_017866_020--Hb_000045_180 Hb_002007_140 Hb_002007_140 Hb_017866_020--Hb_002007_140 Hb_003119_070 Hb_003119_070 Hb_005663_050--Hb_003119_070 Hb_085327_010 Hb_085327_010 Hb_005663_050--Hb_085327_010 Hb_005663_050--Hb_002003_020 Hb_002671_110 Hb_002671_110 Hb_005663_050--Hb_002671_110 Hb_005663_050--Hb_001283_010 Hb_005218_070 Hb_005218_070 Hb_000057_010--Hb_005218_070 Hb_000057_010--Hb_002671_110 Hb_009515_010 Hb_009515_010 Hb_000057_010--Hb_009515_010 Hb_007163_020 Hb_007163_020 Hb_000057_010--Hb_007163_020 Hb_000334_250 Hb_000334_250 Hb_000057_010--Hb_000334_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.1344 2.49793 0.0834031 0.832183 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.1563 0

CAGE analysis