Hb_031954_010

Information

Type -
Description -
Location Contig31954: 4988-14923
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031954_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_004341_010 0.0537060055 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
3 Hb_001283_010 0.0949853152 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
4 Hb_002762_070 0.1051887829 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
5 Hb_028207_030 0.1059236654 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
6 Hb_000077_460 0.1100707366 - - -
7 Hb_004837_170 0.1119923133 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]
8 Hb_031862_090 0.1139365304 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
9 Hb_001021_140 0.1216219111 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
10 Hb_000365_290 0.1227339633 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
11 Hb_027445_080 0.1239492131 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
12 Hb_007850_040 0.124629828 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002282_030 0.1307679252 - - -
14 Hb_000891_060 0.1362322637 - - hypothetical protein JCGZ_11234 [Jatropha curcas]
15 Hb_000616_060 0.1396695429 - - -
16 Hb_000189_490 0.1410197347 - - Sulfate/thiosulfate import ATP-binding protein cysA [Theobroma cacao]
17 Hb_000575_010 0.1422234923 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
18 Hb_004136_050 0.1431559708 - - -
19 Hb_004724_070 0.1449577613 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
20 Hb_000935_070 0.1452151411 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_031954_010 Hb_031954_010 Hb_004341_010 Hb_004341_010 Hb_031954_010--Hb_004341_010 Hb_001283_010 Hb_001283_010 Hb_031954_010--Hb_001283_010 Hb_002762_070 Hb_002762_070 Hb_031954_010--Hb_002762_070 Hb_028207_030 Hb_028207_030 Hb_031954_010--Hb_028207_030 Hb_000077_460 Hb_000077_460 Hb_031954_010--Hb_000077_460 Hb_004837_170 Hb_004837_170 Hb_031954_010--Hb_004837_170 Hb_004341_010--Hb_004837_170 Hb_004341_010--Hb_002762_070 Hb_004341_010--Hb_000077_460 Hb_004341_010--Hb_028207_030 Hb_004341_010--Hb_001283_010 Hb_001283_010--Hb_000077_460 Hb_004136_050 Hb_004136_050 Hb_001283_010--Hb_004136_050 Hb_017866_020 Hb_017866_020 Hb_001283_010--Hb_017866_020 Hb_002003_020 Hb_002003_020 Hb_001283_010--Hb_002003_020 Hb_027445_080 Hb_027445_080 Hb_002762_070--Hb_027445_080 Hb_000365_290 Hb_000365_290 Hb_002762_070--Hb_000365_290 Hb_017661_020 Hb_017661_020 Hb_002762_070--Hb_017661_020 Hb_002762_070--Hb_004837_170 Hb_002762_070--Hb_028207_030 Hb_031862_090 Hb_031862_090 Hb_002762_070--Hb_031862_090 Hb_028207_030--Hb_000077_460 Hb_028207_030--Hb_031862_090 Hb_028207_030--Hb_027445_080 Hb_000077_460--Hb_017866_020 Hb_000045_180 Hb_000045_180 Hb_000077_460--Hb_000045_180 Hb_013914_020 Hb_013914_020 Hb_000077_460--Hb_013914_020 Hb_000077_460--Hb_002003_020 Hb_004837_170--Hb_027445_080 Hb_004724_070 Hb_004724_070 Hb_004837_170--Hb_004724_070 Hb_002282_030 Hb_002282_030 Hb_004837_170--Hb_002282_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0686215 2.61814 0.0254898 1.64096 0.0107084 0.0111786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.66656 0

CAGE analysis