Hb_004837_170

Information

Type -
Description -
Location Contig4837: 158061-158480
Sequence    

Annotation

kegg
ID tcc:TCM_040708
description hypothetical protein
nr
ID XP_012090012.1
description PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JE45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25928 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44881: 157514-157812
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_170 0.0 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]
2 Hb_027445_080 0.0874089986 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
3 Hb_004341_010 0.091428456 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
4 Hb_002762_070 0.0952081206 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
5 Hb_031954_010 0.1119923133 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_004724_070 0.1199683219 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
7 Hb_002282_030 0.1241481278 - - -
8 Hb_000365_290 0.1243604698 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
9 Hb_000891_060 0.1261476722 - - hypothetical protein JCGZ_11234 [Jatropha curcas]
10 Hb_017661_020 0.1264429987 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
11 Hb_031862_090 0.126758201 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
12 Hb_000616_060 0.1275902979 - - -
13 Hb_000575_010 0.1284519908 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
14 Hb_005203_010 0.1319249189 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
15 Hb_028207_030 0.1329547167 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
16 Hb_002735_010 0.1437721768 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume]
17 Hb_004218_230 0.1439861545 - - Peptide transporter, putative [Ricinus communis]
18 Hb_009543_040 0.1460101303 - - -
19 Hb_000077_460 0.1543957593 - - -
20 Hb_001157_130 0.1562889932 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]

Gene co-expression network

sample Hb_004837_170 Hb_004837_170 Hb_027445_080 Hb_027445_080 Hb_004837_170--Hb_027445_080 Hb_004341_010 Hb_004341_010 Hb_004837_170--Hb_004341_010 Hb_002762_070 Hb_002762_070 Hb_004837_170--Hb_002762_070 Hb_031954_010 Hb_031954_010 Hb_004837_170--Hb_031954_010 Hb_004724_070 Hb_004724_070 Hb_004837_170--Hb_004724_070 Hb_002282_030 Hb_002282_030 Hb_004837_170--Hb_002282_030 Hb_027445_080--Hb_002762_070 Hb_017661_020 Hb_017661_020 Hb_027445_080--Hb_017661_020 Hb_005203_010 Hb_005203_010 Hb_027445_080--Hb_005203_010 Hb_031862_090 Hb_031862_090 Hb_027445_080--Hb_031862_090 Hb_027445_080--Hb_002282_030 Hb_004341_010--Hb_031954_010 Hb_004341_010--Hb_002762_070 Hb_000077_460 Hb_000077_460 Hb_004341_010--Hb_000077_460 Hb_028207_030 Hb_028207_030 Hb_004341_010--Hb_028207_030 Hb_001283_010 Hb_001283_010 Hb_004341_010--Hb_001283_010 Hb_000365_290 Hb_000365_290 Hb_002762_070--Hb_000365_290 Hb_002762_070--Hb_017661_020 Hb_002762_070--Hb_028207_030 Hb_002762_070--Hb_031862_090 Hb_031954_010--Hb_001283_010 Hb_031954_010--Hb_002762_070 Hb_031954_010--Hb_028207_030 Hb_031954_010--Hb_000077_460 Hb_004724_070--Hb_002282_030 Hb_004724_070--Hb_028207_030 Hb_000891_060 Hb_000891_060 Hb_004724_070--Hb_000891_060 Hb_000616_060 Hb_000616_060 Hb_004724_070--Hb_000616_060 Hb_000575_010 Hb_000575_010 Hb_004724_070--Hb_000575_010 Hb_002282_030--Hb_000891_060 Hb_002282_030--Hb_000616_060 Hb_002282_030--Hb_000575_010 Hb_009543_040 Hb_009543_040 Hb_002282_030--Hb_009543_040 Hb_001157_130 Hb_001157_130 Hb_002282_030--Hb_001157_130 Hb_002282_030--Hb_031862_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153796 15.5081 0.365032 12.0745 0.0724801 0.397838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.181776 0 0 12.1902 0

CAGE analysis