Hb_002762_070

Information

Type transcription factor
Description TF Family: HB
Location Contig2762: 76675-85267
Sequence    

Annotation

kegg
ID rcu:RCOM_1510310
description homeobox protein knotted-1, putative
nr
ID XP_002511373.1
description homeobox protein knotted-1, putative [Ricinus communis]
swissprot
ID Q84JS6
description Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1
trembl
ID B9RAZ8
description Homeobox protein knotted-1, putative OS=Ricinus communis GN=RCOM_1510310 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein knotted-1-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28901: 84640-85052
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002762_070 0.0 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
2 Hb_027445_080 0.05923372 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
3 Hb_000365_290 0.0620996283 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
4 Hb_017661_020 0.0836718229 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
5 Hb_004837_170 0.0952081206 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]
6 Hb_028207_030 0.0952995315 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
7 Hb_031862_090 0.1040726036 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
8 Hb_002282_030 0.1042780316 - - -
9 Hb_031954_010 0.1051887829 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_004341_010 0.1055302783 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
11 Hb_000891_060 0.1073116421 - - hypothetical protein JCGZ_11234 [Jatropha curcas]
12 Hb_000616_060 0.1093986726 - - -
13 Hb_000575_010 0.1107328362 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
14 Hb_005203_010 0.114878455 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
15 Hb_000077_460 0.118122615 - - -
16 Hb_012395_150 0.1245421343 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
17 Hb_001283_010 0.1300807724 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
18 Hb_009543_040 0.1342184787 - - -
19 Hb_006395_010 0.1347602546 - - hypothetical protein RCOM_0725500 [Ricinus communis]
20 Hb_004156_010 0.1385041119 - - hypothetical protein JCGZ_08917 [Jatropha curcas]

Gene co-expression network

sample Hb_002762_070 Hb_002762_070 Hb_027445_080 Hb_027445_080 Hb_002762_070--Hb_027445_080 Hb_000365_290 Hb_000365_290 Hb_002762_070--Hb_000365_290 Hb_017661_020 Hb_017661_020 Hb_002762_070--Hb_017661_020 Hb_004837_170 Hb_004837_170 Hb_002762_070--Hb_004837_170 Hb_028207_030 Hb_028207_030 Hb_002762_070--Hb_028207_030 Hb_031862_090 Hb_031862_090 Hb_002762_070--Hb_031862_090 Hb_027445_080--Hb_017661_020 Hb_005203_010 Hb_005203_010 Hb_027445_080--Hb_005203_010 Hb_027445_080--Hb_031862_090 Hb_027445_080--Hb_004837_170 Hb_002282_030 Hb_002282_030 Hb_027445_080--Hb_002282_030 Hb_006395_010 Hb_006395_010 Hb_000365_290--Hb_006395_010 Hb_001283_010 Hb_001283_010 Hb_000365_290--Hb_001283_010 Hb_000365_290--Hb_027445_080 Hb_000365_290--Hb_028207_030 Hb_000077_460 Hb_000077_460 Hb_000365_290--Hb_000077_460 Hb_000127_070 Hb_000127_070 Hb_017661_020--Hb_000127_070 Hb_012395_150 Hb_012395_150 Hb_017661_020--Hb_012395_150 Hb_017661_020--Hb_005203_010 Hb_004218_230 Hb_004218_230 Hb_017661_020--Hb_004218_230 Hb_004341_010 Hb_004341_010 Hb_004837_170--Hb_004341_010 Hb_031954_010 Hb_031954_010 Hb_004837_170--Hb_031954_010 Hb_004724_070 Hb_004724_070 Hb_004837_170--Hb_004724_070 Hb_004837_170--Hb_002282_030 Hb_028207_030--Hb_000077_460 Hb_028207_030--Hb_031954_010 Hb_028207_030--Hb_004341_010 Hb_028207_030--Hb_031862_090 Hb_028207_030--Hb_027445_080 Hb_031862_090--Hb_005203_010 Hb_031862_090--Hb_002282_030 Hb_000891_060 Hb_000891_060 Hb_031862_090--Hb_000891_060 Hb_000616_060 Hb_000616_060 Hb_031862_090--Hb_000616_060 Hb_000575_010 Hb_000575_010 Hb_031862_090--Hb_000575_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0182488 2.94539 0.128013 2.22572 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.40522 0

CAGE analysis