Hb_005203_010

Information

Type -
Description -
Location Contig5203: 7560-10953
Sequence    

Annotation

kegg
ID rcu:RCOM_0546040
description nucleolar protein nop56, putative
nr
ID XP_012075114.1
description PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
swissprot
ID O04658
description Probable nucleolar protein 5-1 OS=Arabidopsis thaliana GN=NOP5-1 PE=2 SV=2
trembl
ID A0A067KU36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10348 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005203_010 0.0 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
2 Hb_031862_090 0.0475944494 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
3 Hb_027445_080 0.0777278441 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
4 Hb_002282_030 0.0792153768 - - -
5 Hb_000891_060 0.0835305172 - - hypothetical protein JCGZ_11234 [Jatropha curcas]
6 Hb_000616_060 0.0863968886 - - -
7 Hb_000575_010 0.0873324686 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
8 Hb_081448_010 0.0982211759 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
9 Hb_009543_040 0.1086286895 - - -
10 Hb_017661_020 0.1115202482 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
11 Hb_002762_070 0.114878455 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
12 Hb_069232_010 0.1190432969 - - PREDICTED: 60S ribosomal protein L37-3-like [Vitis vinifera]
13 Hb_000703_320 0.1227347105 - - receptor-kinase, putative [Ricinus communis]
14 Hb_001021_140 0.1275191668 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
15 Hb_132438_010 0.1312740486 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
16 Hb_004837_170 0.1319249189 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]
17 Hb_004156_010 0.1349655731 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
18 Hb_000751_210 0.1366570934 - - PREDICTED: petal death protein isoform X2 [Jatropha curcas]
19 Hb_004218_230 0.1383236159 - - Peptide transporter, putative [Ricinus communis]
20 Hb_028207_030 0.1395287184 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]

Gene co-expression network

sample Hb_005203_010 Hb_005203_010 Hb_031862_090 Hb_031862_090 Hb_005203_010--Hb_031862_090 Hb_027445_080 Hb_027445_080 Hb_005203_010--Hb_027445_080 Hb_002282_030 Hb_002282_030 Hb_005203_010--Hb_002282_030 Hb_000891_060 Hb_000891_060 Hb_005203_010--Hb_000891_060 Hb_000616_060 Hb_000616_060 Hb_005203_010--Hb_000616_060 Hb_000575_010 Hb_000575_010 Hb_005203_010--Hb_000575_010 Hb_031862_090--Hb_002282_030 Hb_031862_090--Hb_000891_060 Hb_031862_090--Hb_000616_060 Hb_031862_090--Hb_027445_080 Hb_031862_090--Hb_000575_010 Hb_002762_070 Hb_002762_070 Hb_027445_080--Hb_002762_070 Hb_017661_020 Hb_017661_020 Hb_027445_080--Hb_017661_020 Hb_004837_170 Hb_004837_170 Hb_027445_080--Hb_004837_170 Hb_027445_080--Hb_002282_030 Hb_002282_030--Hb_000891_060 Hb_002282_030--Hb_000616_060 Hb_002282_030--Hb_000575_010 Hb_009543_040 Hb_009543_040 Hb_002282_030--Hb_009543_040 Hb_001157_130 Hb_001157_130 Hb_002282_030--Hb_001157_130 Hb_000891_060--Hb_000616_060 Hb_000891_060--Hb_000575_010 Hb_000891_060--Hb_009543_040 Hb_000891_060--Hb_001157_130 Hb_132438_010 Hb_132438_010 Hb_000891_060--Hb_132438_010 Hb_000616_060--Hb_000575_010 Hb_000616_060--Hb_009543_040 Hb_000616_060--Hb_001157_130 Hb_000616_060--Hb_132438_010 Hb_000575_010--Hb_009543_040 Hb_000575_010--Hb_001157_130 Hb_000575_010--Hb_132438_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0399459 0 0.026096 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0230492 0

CAGE analysis