Hb_002843_010

Information

Type -
Description -
Location Contig2843: 711-3150
Sequence    

Annotation

kegg
ID egr:104420216
description probable LRR receptor-like serine/threonine-protein kinase At4g36180
nr
ID KCW62342.1
description hypothetical protein EUGRSUZ_H04984, partial [Eucalyptus grandis]
swissprot
ID Q9SYQ8
description Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3
trembl
ID A0A059B802
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_H04984 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable lrr receptor-like serine threonine-protein kinase at4g36180

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002843_010 0.0 - - hypothetical protein EUGRSUZ_H04984, partial [Eucalyptus grandis]
2 Hb_002272_160 0.1228550207 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_002374_110 0.1283759808 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
4 Hb_007432_050 0.1290997582 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108 [Jatropha curcas]
5 Hb_127743_030 0.1312334715 - - amino acid transporter, putative [Ricinus communis]
6 Hb_007163_020 0.1340506206 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
7 Hb_002671_110 0.1367663838 - - PREDICTED: remorin-like [Jatropha curcas]
8 Hb_001863_460 0.1389295329 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
9 Hb_000441_170 0.1407148021 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
10 Hb_000649_030 0.1434807185 - - scab resistance family protein [Populus trichocarpa]
11 Hb_003166_040 0.1437488405 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
12 Hb_003031_030 0.1463982173 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
13 Hb_001405_100 0.1492366182 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
14 Hb_007328_040 0.1493004389 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Nelumbo nucifera]
15 Hb_000237_150 0.1500825328 - - Epoxide hydrolase 2 [Morus notabilis]
16 Hb_027288_010 0.1513155012 - - mutt domain protein, putative [Ricinus communis]
17 Hb_002900_070 0.1520719816 - - conserved hypothetical protein [Ricinus communis]
18 Hb_186298_010 0.1539150104 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_005663_050 0.1546985971 - - amino acid transporter, putative [Ricinus communis]
20 Hb_000567_310 0.1566039073 - - Miraculin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002843_010 Hb_002843_010 Hb_002272_160 Hb_002272_160 Hb_002843_010--Hb_002272_160 Hb_002374_110 Hb_002374_110 Hb_002843_010--Hb_002374_110 Hb_007432_050 Hb_007432_050 Hb_002843_010--Hb_007432_050 Hb_127743_030 Hb_127743_030 Hb_002843_010--Hb_127743_030 Hb_007163_020 Hb_007163_020 Hb_002843_010--Hb_007163_020 Hb_002671_110 Hb_002671_110 Hb_002843_010--Hb_002671_110 Hb_027288_010 Hb_027288_010 Hb_002272_160--Hb_027288_010 Hb_000441_170 Hb_000441_170 Hb_002272_160--Hb_000441_170 Hb_007483_030 Hb_007483_030 Hb_002272_160--Hb_007483_030 Hb_003052_070 Hb_003052_070 Hb_002272_160--Hb_003052_070 Hb_007747_030 Hb_007747_030 Hb_002272_160--Hb_007747_030 Hb_000567_310 Hb_000567_310 Hb_002272_160--Hb_000567_310 Hb_002374_110--Hb_127743_030 Hb_003166_040 Hb_003166_040 Hb_002374_110--Hb_003166_040 Hb_006919_010 Hb_006919_010 Hb_002374_110--Hb_006919_010 Hb_058526_010 Hb_058526_010 Hb_002374_110--Hb_058526_010 Hb_002374_110--Hb_007483_030 Hb_002374_110--Hb_027288_010 Hb_007432_050--Hb_127743_030 Hb_007432_050--Hb_003166_040 Hb_022998_010 Hb_022998_010 Hb_007432_050--Hb_022998_010 Hb_000649_030 Hb_000649_030 Hb_007432_050--Hb_000649_030 Hb_007432_050--Hb_002374_110 Hb_007432_050--Hb_058526_010 Hb_127743_030--Hb_003166_040 Hb_127743_030--Hb_058526_010 Hb_127743_030--Hb_027288_010 Hb_127743_030--Hb_007483_030 Hb_007328_040 Hb_007328_040 Hb_007163_020--Hb_007328_040 Hb_007163_020--Hb_002671_110 Hb_001640_020 Hb_001640_020 Hb_007163_020--Hb_001640_020 Hb_000057_010 Hb_000057_010 Hb_007163_020--Hb_000057_010 Hb_005218_070 Hb_005218_070 Hb_007163_020--Hb_005218_070 Hb_005228_170 Hb_005228_170 Hb_002671_110--Hb_005228_170 Hb_000238_060 Hb_000238_060 Hb_002671_110--Hb_000238_060 Hb_002671_110--Hb_005218_070 Hb_000237_150 Hb_000237_150 Hb_002671_110--Hb_000237_150 Hb_001405_100 Hb_001405_100 Hb_002671_110--Hb_001405_100 Hb_002081_040 Hb_002081_040 Hb_002671_110--Hb_002081_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0553382 1.03784 0.228184 0.343338 0.0083023 0.0401435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.66496 0

CAGE analysis