Hb_001640_020

Information

Type -
Description -
Location Contig1640: 59513-63681
Sequence    

Annotation

kegg
ID pop:POPTR_0003s21160g
description POPTRDRAFT_711981; hypothetical protein
nr
ID XP_012067133.1
description PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
swissprot
ID Q84MC2
description Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 OS=Arabidopsis thaliana GN=LOG8 PE=1 SV=1
trembl
ID A0A067L0Z4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01885 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15068: 59761-63550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001640_020 0.0 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
2 Hb_007163_020 0.126977409 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_007328_040 0.133217538 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Nelumbo nucifera]
4 Hb_000057_010 0.1507566512 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
5 Hb_004136_050 0.1593286351 - - -
6 Hb_005663_050 0.1613102233 - - amino acid transporter, putative [Ricinus communis]
7 Hb_002843_010 0.1651693723 - - hypothetical protein EUGRSUZ_H04984, partial [Eucalyptus grandis]
8 Hb_001863_460 0.1691196397 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
9 Hb_085327_010 0.1700234275 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
10 Hb_048476_010 0.1723471448 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Citrus sinensis]
11 Hb_003119_070 0.1799412862 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
12 Hb_002671_110 0.1844105133 - - PREDICTED: remorin-like [Jatropha curcas]
13 Hb_005218_070 0.1866695101 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
14 Hb_009515_010 0.1952040442 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
15 Hb_002204_030 0.1954038747 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
16 Hb_005228_170 0.1971733663 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
17 Hb_000334_250 0.1974024583 - - Polygalacturonase precursor, putative [Ricinus communis]
18 Hb_000302_060 0.1991328955 - - unnamed protein product [Vitis vinifera]
19 Hb_005539_160 0.2005572268 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
20 Hb_001283_010 0.2043606765 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]

Gene co-expression network

sample Hb_001640_020 Hb_001640_020 Hb_007163_020 Hb_007163_020 Hb_001640_020--Hb_007163_020 Hb_007328_040 Hb_007328_040 Hb_001640_020--Hb_007328_040 Hb_000057_010 Hb_000057_010 Hb_001640_020--Hb_000057_010 Hb_004136_050 Hb_004136_050 Hb_001640_020--Hb_004136_050 Hb_005663_050 Hb_005663_050 Hb_001640_020--Hb_005663_050 Hb_002843_010 Hb_002843_010 Hb_001640_020--Hb_002843_010 Hb_007163_020--Hb_007328_040 Hb_002671_110 Hb_002671_110 Hb_007163_020--Hb_002671_110 Hb_007163_020--Hb_000057_010 Hb_007163_020--Hb_002843_010 Hb_005218_070 Hb_005218_070 Hb_007163_020--Hb_005218_070 Hb_002900_070 Hb_002900_070 Hb_007328_040--Hb_002900_070 Hb_000441_170 Hb_000441_170 Hb_007328_040--Hb_000441_170 Hb_002475_020 Hb_002475_020 Hb_007328_040--Hb_002475_020 Hb_098795_010 Hb_098795_010 Hb_007328_040--Hb_098795_010 Hb_000057_010--Hb_005218_070 Hb_000057_010--Hb_002671_110 Hb_009515_010 Hb_009515_010 Hb_000057_010--Hb_009515_010 Hb_000057_010--Hb_004136_050 Hb_000334_250 Hb_000334_250 Hb_000057_010--Hb_000334_250 Hb_001283_010 Hb_001283_010 Hb_004136_050--Hb_001283_010 Hb_001863_460 Hb_001863_460 Hb_004136_050--Hb_001863_460 Hb_002003_020 Hb_002003_020 Hb_004136_050--Hb_002003_020 Hb_017866_020 Hb_017866_020 Hb_004136_050--Hb_017866_020 Hb_004136_050--Hb_005663_050 Hb_003119_070 Hb_003119_070 Hb_005663_050--Hb_003119_070 Hb_085327_010 Hb_085327_010 Hb_005663_050--Hb_085327_010 Hb_005663_050--Hb_002003_020 Hb_005663_050--Hb_002671_110 Hb_005663_050--Hb_001283_010 Hb_002272_160 Hb_002272_160 Hb_002843_010--Hb_002272_160 Hb_002374_110 Hb_002374_110 Hb_002843_010--Hb_002374_110 Hb_007432_050 Hb_007432_050 Hb_002843_010--Hb_007432_050 Hb_127743_030 Hb_127743_030 Hb_002843_010--Hb_127743_030 Hb_002843_010--Hb_002671_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.203863 0.923053 0.0272411 0.405617 0 0.0438691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.12984 0

CAGE analysis