Hb_003119_070

Information

Type -
Description -
Location Contig3119: 36817-42030
Sequence    

Annotation

kegg
ID rcu:RCOM_0821520
description Phytosulfokine receptor precursor, putative (EC:3.1.3.16 1.3.1.74)
nr
ID XP_002525820.1
description Phytosulfokine receptor precursor, putative [Ricinus communis]
swissprot
ID Q8LPB4
description Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1
trembl
ID B9SIK1
description Phytosulfokine receptor, putative OS=Ricinus communis GN=RCOM_0821520 PE=4 SV=1
Gene Ontology
ID GO:0004721
description phytosulfokine receptor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32975: 39668-42053
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003119_070 0.0 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
2 Hb_005663_050 0.1172200052 - - amino acid transporter, putative [Ricinus communis]
3 Hb_002003_020 0.1298531402 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
4 Hb_001838_050 0.1312769287 - - hypothetical protein B456_007G218500 [Gossypium raimondii]
5 Hb_003031_030 0.133308044 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
6 Hb_017866_020 0.1358815729 transcription factor TF Family: WRKY WRKY transcription factor 40 [Jatropha curcas]
7 Hb_000616_050 0.1377043412 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
8 Hb_000141_220 0.1377063291 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
9 Hb_000057_010 0.1428230632 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
10 Hb_019229_020 0.1446440876 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
11 Hb_004136_050 0.1472239628 - - -
12 Hb_002671_110 0.1476737808 - - PREDICTED: remorin-like [Jatropha curcas]
13 Hb_011970_040 0.1480651175 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001454_340 0.1491429248 - - ATDI21 [Manihot esculenta]
15 Hb_055305_010 0.1512797593 - - Disease resistance protein RFL1, putative [Ricinus communis]
16 Hb_001678_030 0.1514932419 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
17 Hb_142332_010 0.1525708053 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
18 Hb_164010_090 0.1530467448 - - cellulose synthase, putative [Ricinus communis]
19 Hb_002007_230 0.1537191392 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
20 Hb_001135_290 0.1572580371 - - hypothetical protein JCGZ_06658 [Jatropha curcas]

Gene co-expression network

sample Hb_003119_070 Hb_003119_070 Hb_005663_050 Hb_005663_050 Hb_003119_070--Hb_005663_050 Hb_002003_020 Hb_002003_020 Hb_003119_070--Hb_002003_020 Hb_001838_050 Hb_001838_050 Hb_003119_070--Hb_001838_050 Hb_003031_030 Hb_003031_030 Hb_003119_070--Hb_003031_030 Hb_017866_020 Hb_017866_020 Hb_003119_070--Hb_017866_020 Hb_000616_050 Hb_000616_050 Hb_003119_070--Hb_000616_050 Hb_085327_010 Hb_085327_010 Hb_005663_050--Hb_085327_010 Hb_005663_050--Hb_002003_020 Hb_004136_050 Hb_004136_050 Hb_005663_050--Hb_004136_050 Hb_002671_110 Hb_002671_110 Hb_005663_050--Hb_002671_110 Hb_001283_010 Hb_001283_010 Hb_005663_050--Hb_001283_010 Hb_002003_020--Hb_017866_020 Hb_019229_020 Hb_019229_020 Hb_002003_020--Hb_019229_020 Hb_002003_020--Hb_004136_050 Hb_000077_460 Hb_000077_460 Hb_002003_020--Hb_000077_460 Hb_001638_110 Hb_001638_110 Hb_002003_020--Hb_001638_110 Hb_002003_020--Hb_001283_010 Hb_004574_010 Hb_004574_010 Hb_001838_050--Hb_004574_010 Hb_001838_050--Hb_003031_030 Hb_000237_150 Hb_000237_150 Hb_001838_050--Hb_000237_150 Hb_088916_010 Hb_088916_010 Hb_001838_050--Hb_088916_010 Hb_001838_050--Hb_000616_050 Hb_001693_020 Hb_001693_020 Hb_001838_050--Hb_001693_020 Hb_003031_030--Hb_004574_010 Hb_003031_030--Hb_000616_050 Hb_002805_150 Hb_002805_150 Hb_003031_030--Hb_002805_150 Hb_012395_070 Hb_012395_070 Hb_003031_030--Hb_012395_070 Hb_012753_200 Hb_012753_200 Hb_003031_030--Hb_012753_200 Hb_017866_020--Hb_000077_460 Hb_013914_020 Hb_013914_020 Hb_017866_020--Hb_013914_020 Hb_000045_180 Hb_000045_180 Hb_017866_020--Hb_000045_180 Hb_002007_140 Hb_002007_140 Hb_017866_020--Hb_002007_140 Hb_017866_020--Hb_001283_010 Hb_000616_050--Hb_000237_150 Hb_000616_050--Hb_019229_020 Hb_000649_030 Hb_000649_030 Hb_000616_050--Hb_000649_030 Hb_000852_050 Hb_000852_050 Hb_000616_050--Hb_000852_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0323782 1.14243 0.0445056 0.359754 0.00451661 0.0342766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0172113 0.033052 1.75202 0.0368784

CAGE analysis