Hb_007328_040

Information

Type -
Description -
Location Contig7328: 31015-35145
Sequence    

Annotation

kegg
ID pda:103709798
description probable LRR receptor-like serine/threonine-protein kinase At3g47570
nr
ID XP_010269666.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Nelumbo nucifera]
swissprot
ID Q9SYQ8
description Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3
trembl
ID G7KI97
description LRR receptor-like kinase family protein OS=Medicago truncatula GN=MTR_6g036790 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007328_040 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Nelumbo nucifera]
2 Hb_007163_020 0.0978279016 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_001640_020 0.133217538 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
4 Hb_002900_070 0.1336256605 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000441_170 0.1355893539 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
6 Hb_002475_020 0.137651325 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
7 Hb_098795_010 0.1379786766 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
8 Hb_001971_070 0.1403805891 - - unnamed protein product [Coffea canephora]
9 Hb_000057_010 0.1413519653 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
10 Hb_000175_480 0.1418587275 - - hypothetical protein JCGZ_06165 [Jatropha curcas]
11 Hb_000003_470 0.1419557308 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000948_070 0.147847485 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
13 Hb_002671_110 0.1479497001 - - PREDICTED: remorin-like [Jatropha curcas]
14 Hb_005218_070 0.1485886991 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
15 Hb_002843_010 0.1493004389 - - hypothetical protein EUGRSUZ_H04984, partial [Eucalyptus grandis]
16 Hb_166813_010 0.1515695463 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
17 Hb_002272_160 0.1530407932 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
18 Hb_000567_310 0.1554839105 - - Miraculin precursor, putative [Ricinus communis]
19 Hb_002556_020 0.1560386345 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
20 Hb_025526_090 0.1568918094 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]

Gene co-expression network

sample Hb_007328_040 Hb_007328_040 Hb_007163_020 Hb_007163_020 Hb_007328_040--Hb_007163_020 Hb_001640_020 Hb_001640_020 Hb_007328_040--Hb_001640_020 Hb_002900_070 Hb_002900_070 Hb_007328_040--Hb_002900_070 Hb_000441_170 Hb_000441_170 Hb_007328_040--Hb_000441_170 Hb_002475_020 Hb_002475_020 Hb_007328_040--Hb_002475_020 Hb_098795_010 Hb_098795_010 Hb_007328_040--Hb_098795_010 Hb_002671_110 Hb_002671_110 Hb_007163_020--Hb_002671_110 Hb_007163_020--Hb_001640_020 Hb_000057_010 Hb_000057_010 Hb_007163_020--Hb_000057_010 Hb_002843_010 Hb_002843_010 Hb_007163_020--Hb_002843_010 Hb_005218_070 Hb_005218_070 Hb_007163_020--Hb_005218_070 Hb_001640_020--Hb_000057_010 Hb_004136_050 Hb_004136_050 Hb_001640_020--Hb_004136_050 Hb_005663_050 Hb_005663_050 Hb_001640_020--Hb_005663_050 Hb_001640_020--Hb_002843_010 Hb_002900_070--Hb_000441_170 Hb_000948_070 Hb_000948_070 Hb_002900_070--Hb_000948_070 Hb_006006_070 Hb_006006_070 Hb_002900_070--Hb_006006_070 Hb_002232_400 Hb_002232_400 Hb_002900_070--Hb_002232_400 Hb_002110_270 Hb_002110_270 Hb_002900_070--Hb_002110_270 Hb_076895_020 Hb_076895_020 Hb_002900_070--Hb_076895_020 Hb_000441_170--Hb_002232_400 Hb_000441_170--Hb_006006_070 Hb_002272_160 Hb_002272_160 Hb_000441_170--Hb_002272_160 Hb_000441_170--Hb_098795_010 Hb_000441_170--Hb_076895_020 Hb_002556_020 Hb_002556_020 Hb_002475_020--Hb_002556_020 Hb_000141_230 Hb_000141_230 Hb_002475_020--Hb_000141_230 Hb_002999_090 Hb_002999_090 Hb_002475_020--Hb_002999_090 Hb_000302_060 Hb_000302_060 Hb_002475_020--Hb_000302_060 Hb_003462_150 Hb_003462_150 Hb_002475_020--Hb_003462_150 Hb_004544_080 Hb_004544_080 Hb_002475_020--Hb_004544_080 Hb_006538_050 Hb_006538_050 Hb_098795_010--Hb_006538_050 Hb_098795_010--Hb_002272_160 Hb_000003_470 Hb_000003_470 Hb_098795_010--Hb_000003_470 Hb_003786_060 Hb_003786_060 Hb_098795_010--Hb_003786_060 Hb_003052_070 Hb_003052_070 Hb_098795_010--Hb_003052_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0555019 0.315389 0.022829 0.182319 0.00604811 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.19695 0

CAGE analysis