Hb_002743_030

Information

Type transcription factor
Description TF Family: MYB
Location Contig2743: 32796-34341
Sequence    

Annotation

kegg
ID pop:POPTR_0006s12530g
description hypothetical protein
nr
ID XP_011006617.1
description PREDICTED: transcription factor RAX2 [Populus euphratica]
swissprot
ID Q9M2Y9
description Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1
trembl
ID U5GA63
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s12530g PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor rax2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002743_030 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor RAX2 [Populus euphratica]
2 Hb_125876_010 0.0523107511 - - unnamed protein product [Vitis vinifera]
3 Hb_003074_070 0.0598313678 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_002603_020 0.064790005 - - PREDICTED: O-acetyl-ADP-ribose deacetylase MACROD2-like isoform X1 [Jatropha curcas]
5 Hb_047163_010 0.0689624997 - - PREDICTED: periaxin-like [Populus euphratica]
6 Hb_005731_080 0.069074378 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
7 Hb_004109_300 0.0739309963 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
8 Hb_011628_030 0.0770556584 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005993_070 0.0784601069 - - lipid binding protein, putative [Ricinus communis]
10 Hb_005846_010 0.0828840818 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
11 Hb_156949_010 0.0830160901 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
12 Hb_059162_010 0.0835141789 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_004195_040 0.0849248962 - - salicylic acid methyl transferase [Capsicum annuum]
14 Hb_012019_030 0.0873054964 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
15 Hb_006478_190 0.0947030352 - - lipid binding protein, putative [Ricinus communis]
16 Hb_011819_030 0.0976522173 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000107_460 0.1006810403 - - PREDICTED: uncharacterized protein LOC104585930 [Nelumbo nucifera]
18 Hb_001504_290 0.1010311905 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
19 Hb_003724_030 0.1011658881 - - -
20 Hb_008159_030 0.1012416194 - - hypothetical protein B456_004G088300 [Gossypium raimondii]

Gene co-expression network

sample Hb_002743_030 Hb_002743_030 Hb_125876_010 Hb_125876_010 Hb_002743_030--Hb_125876_010 Hb_003074_070 Hb_003074_070 Hb_002743_030--Hb_003074_070 Hb_002603_020 Hb_002603_020 Hb_002743_030--Hb_002603_020 Hb_047163_010 Hb_047163_010 Hb_002743_030--Hb_047163_010 Hb_005731_080 Hb_005731_080 Hb_002743_030--Hb_005731_080 Hb_004109_300 Hb_004109_300 Hb_002743_030--Hb_004109_300 Hb_005846_010 Hb_005846_010 Hb_125876_010--Hb_005846_010 Hb_156949_010 Hb_156949_010 Hb_125876_010--Hb_156949_010 Hb_125876_010--Hb_002603_020 Hb_125876_010--Hb_004109_300 Hb_011628_030 Hb_011628_030 Hb_125876_010--Hb_011628_030 Hb_122574_020 Hb_122574_020 Hb_003074_070--Hb_122574_020 Hb_004195_040 Hb_004195_040 Hb_003074_070--Hb_004195_040 Hb_012019_030 Hb_012019_030 Hb_003074_070--Hb_012019_030 Hb_003074_070--Hb_004109_300 Hb_000951_030 Hb_000951_030 Hb_003074_070--Hb_000951_030 Hb_002603_020--Hb_156949_010 Hb_000163_310 Hb_000163_310 Hb_002603_020--Hb_000163_310 Hb_007441_030 Hb_007441_030 Hb_002603_020--Hb_007441_030 Hb_000703_310 Hb_000703_310 Hb_002603_020--Hb_000703_310 Hb_002621_020 Hb_002621_020 Hb_002603_020--Hb_002621_020 Hb_047163_010--Hb_011628_030 Hb_059162_010 Hb_059162_010 Hb_047163_010--Hb_059162_010 Hb_047163_010--Hb_125876_010 Hb_047163_010--Hb_004109_300 Hb_004931_060 Hb_004931_060 Hb_047163_010--Hb_004931_060 Hb_005993_070 Hb_005993_070 Hb_005731_080--Hb_005993_070 Hb_005731_080--Hb_012019_030 Hb_006478_190 Hb_006478_190 Hb_005731_080--Hb_006478_190 Hb_005731_080--Hb_004195_040 Hb_000365_300 Hb_000365_300 Hb_005731_080--Hb_000365_300 Hb_000236_360 Hb_000236_360 Hb_004109_300--Hb_000236_360 Hb_004109_300--Hb_156949_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.71962 0.0163463 0.106272 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.25223 0

CAGE analysis