Hb_000703_310

Information

Type -
Description -
Location Contig703: 295502-296773
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A0A9QBB9
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54965: 295758-295976 , PASA_asmbl_54966: 296597-297259
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_310 0.0 - - -
2 Hb_007441_030 0.0028169688 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
3 Hb_002621_020 0.0033926383 - - -
4 Hb_000163_310 0.0080422413 - - PREDICTED: ABC transporter C family member 4-like [Malus domestica]
5 Hb_010139_010 0.0103836846 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
6 Hb_005656_090 0.0113672623 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
7 Hb_006364_010 0.0173052454 - - -
8 Hb_005228_090 0.0179500908 - - PREDICTED: magnesium transporter MRS2-3-like [Citrus sinensis]
9 Hb_004693_030 0.0206523502 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
10 Hb_072368_010 0.0232907284 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
11 Hb_004918_040 0.0255759285 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003735_010 0.0277039371 - - -
13 Hb_008397_020 0.0278422077 - - polyprotein [Oryza australiensis]
14 Hb_001719_030 0.028553128 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_083377_010 0.0292075505 - - unnamed protein product [Vitis vinifera]
16 Hb_008159_030 0.0329500444 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
17 Hb_000107_460 0.0455586642 - - PREDICTED: uncharacterized protein LOC104585930 [Nelumbo nucifera]
18 Hb_001504_290 0.0524057772 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
19 Hb_007658_020 0.0533821368 - - Beta-amyrin synthase [Glycine soja]
20 Hb_000000_220 0.0537100295 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000703_310 Hb_000703_310 Hb_007441_030 Hb_007441_030 Hb_000703_310--Hb_007441_030 Hb_002621_020 Hb_002621_020 Hb_000703_310--Hb_002621_020 Hb_000163_310 Hb_000163_310 Hb_000703_310--Hb_000163_310 Hb_010139_010 Hb_010139_010 Hb_000703_310--Hb_010139_010 Hb_005656_090 Hb_005656_090 Hb_000703_310--Hb_005656_090 Hb_006364_010 Hb_006364_010 Hb_000703_310--Hb_006364_010 Hb_007441_030--Hb_000163_310 Hb_007441_030--Hb_002621_020 Hb_007441_030--Hb_010139_010 Hb_007441_030--Hb_005656_090 Hb_007441_030--Hb_006364_010 Hb_002621_020--Hb_010139_010 Hb_002621_020--Hb_005656_090 Hb_002621_020--Hb_000163_310 Hb_002621_020--Hb_006364_010 Hb_000163_310--Hb_006364_010 Hb_005228_090 Hb_005228_090 Hb_000163_310--Hb_005228_090 Hb_004693_030 Hb_004693_030 Hb_000163_310--Hb_004693_030 Hb_010139_010--Hb_005656_090 Hb_004918_040 Hb_004918_040 Hb_010139_010--Hb_004918_040 Hb_003735_010 Hb_003735_010 Hb_010139_010--Hb_003735_010 Hb_005656_090--Hb_004918_040 Hb_005656_090--Hb_003735_010 Hb_006364_010--Hb_005228_090 Hb_006364_010--Hb_004693_030 Hb_072368_010 Hb_072368_010 Hb_006364_010--Hb_072368_010 Hb_008159_030 Hb_008159_030 Hb_006364_010--Hb_008159_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0508138 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.100554 0

CAGE analysis