Hb_004693_030

Information

Type -
Description -
Location Contig4693: 50067-51286
Sequence    

Annotation

kegg
ID mdm:103453337
description putative ribonuclease H protein At1g65750
nr
ID XP_008391104.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
swissprot
ID -
description -
trembl
ID B9RYP9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1312510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004693_030 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
2 Hb_072368_010 0.00263895 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
3 Hb_005228_090 0.0027027082 - - PREDICTED: magnesium transporter MRS2-3-like [Citrus sinensis]
4 Hb_006364_010 0.0033476403 - - -
5 Hb_008159_030 0.0123015044 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
6 Hb_000163_310 0.0126110373 - - PREDICTED: ABC transporter C family member 4-like [Malus domestica]
7 Hb_007441_030 0.0178358388 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
8 Hb_000703_310 0.0206523502 - - -
9 Hb_002621_020 0.0240442507 - - -
10 Hb_000107_460 0.024917135 - - PREDICTED: uncharacterized protein LOC104585930 [Nelumbo nucifera]
11 Hb_010139_010 0.0310331405 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
12 Hb_001504_290 0.03176942 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
13 Hb_005656_090 0.0320163469 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
14 Hb_003724_030 0.0332374698 - - -
15 Hb_000526_130 0.0351718964 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
16 Hb_009230_030 0.042481752 - - -
17 Hb_004918_040 0.0462178205 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003735_010 0.0483444623 - - -
19 Hb_008397_020 0.0484826415 - - polyprotein [Oryza australiensis]
20 Hb_001719_030 0.0491930869 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_004693_030 Hb_004693_030 Hb_072368_010 Hb_072368_010 Hb_004693_030--Hb_072368_010 Hb_005228_090 Hb_005228_090 Hb_004693_030--Hb_005228_090 Hb_006364_010 Hb_006364_010 Hb_004693_030--Hb_006364_010 Hb_008159_030 Hb_008159_030 Hb_004693_030--Hb_008159_030 Hb_000163_310 Hb_000163_310 Hb_004693_030--Hb_000163_310 Hb_007441_030 Hb_007441_030 Hb_004693_030--Hb_007441_030 Hb_072368_010--Hb_005228_090 Hb_072368_010--Hb_006364_010 Hb_072368_010--Hb_008159_030 Hb_072368_010--Hb_000163_310 Hb_072368_010--Hb_007441_030 Hb_005228_090--Hb_006364_010 Hb_005228_090--Hb_000163_310 Hb_005228_090--Hb_008159_030 Hb_005228_090--Hb_007441_030 Hb_006364_010--Hb_000163_310 Hb_006364_010--Hb_007441_030 Hb_006364_010--Hb_008159_030 Hb_000107_460 Hb_000107_460 Hb_008159_030--Hb_000107_460 Hb_001504_290 Hb_001504_290 Hb_008159_030--Hb_001504_290 Hb_000163_310--Hb_007441_030 Hb_000703_310 Hb_000703_310 Hb_000163_310--Hb_000703_310 Hb_002621_020 Hb_002621_020 Hb_000163_310--Hb_002621_020 Hb_007441_030--Hb_000703_310 Hb_007441_030--Hb_002621_020 Hb_010139_010 Hb_010139_010 Hb_007441_030--Hb_010139_010 Hb_005656_090 Hb_005656_090 Hb_007441_030--Hb_005656_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0917731 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.201494 0

CAGE analysis