Hb_005656_090

Information

Type transcription factor
Description TF Family: NAC
Location Contig5656: 64427-66567
Sequence    

Annotation

kegg
ID cic:CICLE_v10008885mg
description hypothetical protein
nr
ID XP_006450119.1
description hypothetical protein CICLE_v10008885mg [Citrus clementina]
swissprot
ID O04017
description Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1
trembl
ID A0A067FUX4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037591mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein cup-shaped cotyledon 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_090 0.0 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
2 Hb_010139_010 0.0009836267 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
3 Hb_002621_020 0.0079747545 - - -
4 Hb_000703_310 0.0113672623 - - -
5 Hb_007441_030 0.0141840372 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
6 Hb_004918_040 0.0142103835 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003735_010 0.0163388095 - - -
8 Hb_008397_020 0.0164771086 - - polyprotein [Oryza australiensis]
9 Hb_001719_030 0.0171881784 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_083377_010 0.0178427426 - - unnamed protein product [Vitis vinifera]
11 Hb_000163_310 0.0194087422 - - PREDICTED: ABC transporter C family member 4-like [Malus domestica]
12 Hb_006364_010 0.0286700656 - - -
13 Hb_005228_090 0.0293147613 - - PREDICTED: magnesium transporter MRS2-3-like [Citrus sinensis]
14 Hb_004693_030 0.0320163469 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
15 Hb_072368_010 0.034653994 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
16 Hb_007658_020 0.0420252184 - - Beta-amyrin synthase [Glycine soja]
17 Hb_000000_220 0.042353253 - - protein with unknown function [Ricinus communis]
18 Hb_008159_030 0.0443100053 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
19 Hb_007382_060 0.0459341858 - - -
20 Hb_004195_050 0.0459741252 - - -

Gene co-expression network

sample Hb_005656_090 Hb_005656_090 Hb_010139_010 Hb_010139_010 Hb_005656_090--Hb_010139_010 Hb_002621_020 Hb_002621_020 Hb_005656_090--Hb_002621_020 Hb_000703_310 Hb_000703_310 Hb_005656_090--Hb_000703_310 Hb_007441_030 Hb_007441_030 Hb_005656_090--Hb_007441_030 Hb_004918_040 Hb_004918_040 Hb_005656_090--Hb_004918_040 Hb_003735_010 Hb_003735_010 Hb_005656_090--Hb_003735_010 Hb_010139_010--Hb_002621_020 Hb_010139_010--Hb_000703_310 Hb_010139_010--Hb_007441_030 Hb_010139_010--Hb_004918_040 Hb_010139_010--Hb_003735_010 Hb_002621_020--Hb_000703_310 Hb_002621_020--Hb_007441_030 Hb_000163_310 Hb_000163_310 Hb_002621_020--Hb_000163_310 Hb_006364_010 Hb_006364_010 Hb_002621_020--Hb_006364_010 Hb_000703_310--Hb_007441_030 Hb_000703_310--Hb_000163_310 Hb_000703_310--Hb_006364_010 Hb_007441_030--Hb_000163_310 Hb_007441_030--Hb_006364_010 Hb_004918_040--Hb_003735_010 Hb_008397_020 Hb_008397_020 Hb_004918_040--Hb_008397_020 Hb_001719_030 Hb_001719_030 Hb_004918_040--Hb_001719_030 Hb_083377_010 Hb_083377_010 Hb_004918_040--Hb_083377_010 Hb_003735_010--Hb_008397_020 Hb_003735_010--Hb_001719_030 Hb_003735_010--Hb_083377_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.372062 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.695867 0

CAGE analysis