Hb_001719_030

Information

Type -
Description -
Location Contig1719: 50997-54933
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001719_030 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_083377_010 0.0006546453 - - unnamed protein product [Vitis vinifera]
3 Hb_008397_020 0.0007111512 - - polyprotein [Oryza australiensis]
4 Hb_003735_010 0.0008494654 - - -
5 Hb_004918_040 0.0029780897 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005656_090 0.0171881784 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
7 Hb_010139_010 0.0181716788 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
8 Hb_007658_020 0.0248441511 - - Beta-amyrin synthase [Glycine soja]
9 Hb_002621_020 0.0251615074 - - -
10 Hb_000000_220 0.025172334 - - protein with unknown function [Ricinus communis]
11 Hb_000703_310 0.028553128 - - -
12 Hb_007382_060 0.0287549758 - - -
13 Hb_004195_050 0.0287949353 - - -
14 Hb_007441_030 0.0313690371 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
15 Hb_000163_310 0.036591823 - - PREDICTED: ABC transporter C family member 4-like [Malus domestica]
16 Hb_151236_010 0.0372544423 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
17 Hb_002138_030 0.0408536403 - - -
18 Hb_010839_020 0.0431945958 - - -
19 Hb_006364_010 0.0458487275 - - -
20 Hb_005228_090 0.0464930664 - - PREDICTED: magnesium transporter MRS2-3-like [Citrus sinensis]

Gene co-expression network

sample Hb_001719_030 Hb_001719_030 Hb_083377_010 Hb_083377_010 Hb_001719_030--Hb_083377_010 Hb_008397_020 Hb_008397_020 Hb_001719_030--Hb_008397_020 Hb_003735_010 Hb_003735_010 Hb_001719_030--Hb_003735_010 Hb_004918_040 Hb_004918_040 Hb_001719_030--Hb_004918_040 Hb_005656_090 Hb_005656_090 Hb_001719_030--Hb_005656_090 Hb_010139_010 Hb_010139_010 Hb_001719_030--Hb_010139_010 Hb_083377_010--Hb_008397_020 Hb_083377_010--Hb_003735_010 Hb_083377_010--Hb_004918_040 Hb_083377_010--Hb_005656_090 Hb_083377_010--Hb_010139_010 Hb_008397_020--Hb_003735_010 Hb_008397_020--Hb_004918_040 Hb_008397_020--Hb_005656_090 Hb_008397_020--Hb_010139_010 Hb_003735_010--Hb_004918_040 Hb_003735_010--Hb_005656_090 Hb_003735_010--Hb_010139_010 Hb_004918_040--Hb_005656_090 Hb_004918_040--Hb_010139_010 Hb_005656_090--Hb_010139_010 Hb_002621_020 Hb_002621_020 Hb_005656_090--Hb_002621_020 Hb_000703_310 Hb_000703_310 Hb_005656_090--Hb_000703_310 Hb_007441_030 Hb_007441_030 Hb_005656_090--Hb_007441_030 Hb_010139_010--Hb_002621_020 Hb_010139_010--Hb_000703_310 Hb_010139_010--Hb_007441_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0045732 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00786072 0

CAGE analysis