Hb_004918_040

Information

Type -
Description -
Location Contig4918: 32909-33447
Sequence    

Annotation

kegg
ID rcu:RCOM_1206790
description hypothetical protein
nr
ID XP_002530845.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9SXY8
description CASP-like protein 4D1 OS=Ricinus communis GN=RCOM_1206790 PE=3 SV=1
trembl
ID B9SXY9
description CASP-like protein OS=Ricinus communis GN=RCOM_1206800 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 4d1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004918_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003735_010 0.0021286265 - - -
3 Hb_008397_020 0.0022669405 - - polyprotein [Oryza australiensis]
4 Hb_001719_030 0.0029780897 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_083377_010 0.0036327323 - - unnamed protein product [Vitis vinifera]
6 Hb_005656_090 0.0142103835 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
7 Hb_010139_010 0.0151939227 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
8 Hb_002621_020 0.0221840962 - - -
9 Hb_000703_310 0.0255759285 - - -
10 Hb_007658_020 0.0278214341 - - Beta-amyrin synthase [Glycine soja]
11 Hb_000000_220 0.0281495969 - - protein with unknown function [Ricinus communis]
12 Hb_007441_030 0.0283920358 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
13 Hb_007382_060 0.0317320037 - - -
14 Hb_004195_050 0.0317719604 - - -
15 Hb_000163_310 0.0336152434 - - PREDICTED: ABC transporter C family member 4-like [Malus domestica]
16 Hb_151236_010 0.0402307988 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
17 Hb_006364_010 0.0428730712 - - -
18 Hb_005228_090 0.043517483 - - PREDICTED: magnesium transporter MRS2-3-like [Citrus sinensis]
19 Hb_002138_030 0.0438296646 - - -
20 Hb_010839_020 0.0461703891 - - -

Gene co-expression network

sample Hb_004918_040 Hb_004918_040 Hb_003735_010 Hb_003735_010 Hb_004918_040--Hb_003735_010 Hb_008397_020 Hb_008397_020 Hb_004918_040--Hb_008397_020 Hb_001719_030 Hb_001719_030 Hb_004918_040--Hb_001719_030 Hb_083377_010 Hb_083377_010 Hb_004918_040--Hb_083377_010 Hb_005656_090 Hb_005656_090 Hb_004918_040--Hb_005656_090 Hb_010139_010 Hb_010139_010 Hb_004918_040--Hb_010139_010 Hb_003735_010--Hb_008397_020 Hb_003735_010--Hb_001719_030 Hb_003735_010--Hb_083377_010 Hb_003735_010--Hb_005656_090 Hb_003735_010--Hb_010139_010 Hb_008397_020--Hb_001719_030 Hb_008397_020--Hb_083377_010 Hb_008397_020--Hb_005656_090 Hb_008397_020--Hb_010139_010 Hb_001719_030--Hb_083377_010 Hb_001719_030--Hb_005656_090 Hb_001719_030--Hb_010139_010 Hb_083377_010--Hb_005656_090 Hb_083377_010--Hb_010139_010 Hb_005656_090--Hb_010139_010 Hb_002621_020 Hb_002621_020 Hb_005656_090--Hb_002621_020 Hb_000703_310 Hb_000703_310 Hb_005656_090--Hb_000703_310 Hb_007441_030 Hb_007441_030 Hb_005656_090--Hb_007441_030 Hb_010139_010--Hb_002621_020 Hb_010139_010--Hb_000703_310 Hb_010139_010--Hb_007441_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.210305 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.366787 0

CAGE analysis