Hb_003735_010

Information

Type -
Description -
Location Contig3735: 9307-12451
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003735_010 0.0 - - -
2 Hb_008397_020 0.0001383142 - - polyprotein [Oryza australiensis]
3 Hb_001719_030 0.0008494654 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_083377_010 0.0015041104 - - unnamed protein product [Vitis vinifera]
5 Hb_004918_040 0.0021286265 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005656_090 0.0163388095 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
7 Hb_010139_010 0.0173223217 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
8 Hb_002621_020 0.0243122538 - - -
9 Hb_007658_020 0.0256934043 - - Beta-amyrin synthase [Glycine soja]
10 Hb_000000_220 0.0260215817 - - protein with unknown function [Ricinus communis]
11 Hb_000703_310 0.0277039371 - - -
12 Hb_007382_060 0.0296041591 - - -
13 Hb_004195_050 0.0296441178 - - -
14 Hb_007441_030 0.0305199049 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
15 Hb_000163_310 0.0357428148 - - PREDICTED: ABC transporter C family member 4-like [Malus domestica]
16 Hb_151236_010 0.0381034402 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
17 Hb_002138_030 0.041702546 - - -
18 Hb_010839_020 0.0440434373 - - -
19 Hb_006364_010 0.0449999892 - - -
20 Hb_005228_090 0.0456443494 - - PREDICTED: magnesium transporter MRS2-3-like [Citrus sinensis]

Gene co-expression network

sample Hb_003735_010 Hb_003735_010 Hb_008397_020 Hb_008397_020 Hb_003735_010--Hb_008397_020 Hb_001719_030 Hb_001719_030 Hb_003735_010--Hb_001719_030 Hb_083377_010 Hb_083377_010 Hb_003735_010--Hb_083377_010 Hb_004918_040 Hb_004918_040 Hb_003735_010--Hb_004918_040 Hb_005656_090 Hb_005656_090 Hb_003735_010--Hb_005656_090 Hb_010139_010 Hb_010139_010 Hb_003735_010--Hb_010139_010 Hb_008397_020--Hb_001719_030 Hb_008397_020--Hb_083377_010 Hb_008397_020--Hb_004918_040 Hb_008397_020--Hb_005656_090 Hb_008397_020--Hb_010139_010 Hb_001719_030--Hb_083377_010 Hb_001719_030--Hb_004918_040 Hb_001719_030--Hb_005656_090 Hb_001719_030--Hb_010139_010 Hb_083377_010--Hb_004918_040 Hb_083377_010--Hb_005656_090 Hb_083377_010--Hb_010139_010 Hb_004918_040--Hb_005656_090 Hb_004918_040--Hb_010139_010 Hb_005656_090--Hb_010139_010 Hb_002621_020 Hb_002621_020 Hb_005656_090--Hb_002621_020 Hb_000703_310 Hb_000703_310 Hb_005656_090--Hb_000703_310 Hb_007441_030 Hb_007441_030 Hb_005656_090--Hb_007441_030 Hb_010139_010--Hb_002621_020 Hb_010139_010--Hb_000703_310 Hb_010139_010--Hb_007441_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0097253 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.016786 0

CAGE analysis