Hb_000163_310

Information

Type -
Description -
Location Contig163: 208837-210357
Sequence    

Annotation

kegg
ID mdm:103449274
description ABC transporter C family member 4-like
nr
ID XP_008386779.1
description PREDICTED: ABC transporter C family member 4-like [Malus domestica]
swissprot
ID -
description -
trembl
ID G7LAK1
description PPR containing plant-like protein OS=Medicago truncatula GN=MTR_8g105170 PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_310 0.0 - - PREDICTED: ABC transporter C family member 4-like [Malus domestica]
2 Hb_007441_030 0.005225324 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
3 Hb_000703_310 0.0080422413 - - -
4 Hb_006364_010 0.0092635736 - - -
5 Hb_005228_090 0.0099084816 - - PREDICTED: magnesium transporter MRS2-3-like [Citrus sinensis]
6 Hb_002621_020 0.0114347447 - - -
7 Hb_004693_030 0.0126110373 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
8 Hb_072368_010 0.0152497566 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
9 Hb_010139_010 0.018425265 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
10 Hb_005656_090 0.0194087422 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
11 Hb_008159_030 0.024910767 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
12 Hb_004918_040 0.0336152434 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003735_010 0.0357428148 - - -
14 Hb_008397_020 0.0358810559 - - polyprotein [Oryza australiensis]
15 Hb_001719_030 0.036591823 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_083377_010 0.0372461017 - - unnamed protein product [Vitis vinifera]
17 Hb_000107_460 0.0375226805 - - PREDICTED: uncharacterized protein LOC104585930 [Nelumbo nucifera]
18 Hb_001504_290 0.0443721121 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
19 Hb_003724_030 0.0458394724 - - -
20 Hb_000526_130 0.0477729477 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000163_310 Hb_000163_310 Hb_007441_030 Hb_007441_030 Hb_000163_310--Hb_007441_030 Hb_000703_310 Hb_000703_310 Hb_000163_310--Hb_000703_310 Hb_006364_010 Hb_006364_010 Hb_000163_310--Hb_006364_010 Hb_005228_090 Hb_005228_090 Hb_000163_310--Hb_005228_090 Hb_002621_020 Hb_002621_020 Hb_000163_310--Hb_002621_020 Hb_004693_030 Hb_004693_030 Hb_000163_310--Hb_004693_030 Hb_007441_030--Hb_000703_310 Hb_007441_030--Hb_002621_020 Hb_010139_010 Hb_010139_010 Hb_007441_030--Hb_010139_010 Hb_005656_090 Hb_005656_090 Hb_007441_030--Hb_005656_090 Hb_007441_030--Hb_006364_010 Hb_000703_310--Hb_002621_020 Hb_000703_310--Hb_010139_010 Hb_000703_310--Hb_005656_090 Hb_000703_310--Hb_006364_010 Hb_006364_010--Hb_005228_090 Hb_006364_010--Hb_004693_030 Hb_072368_010 Hb_072368_010 Hb_006364_010--Hb_072368_010 Hb_008159_030 Hb_008159_030 Hb_006364_010--Hb_008159_030 Hb_005228_090--Hb_004693_030 Hb_005228_090--Hb_072368_010 Hb_005228_090--Hb_008159_030 Hb_005228_090--Hb_007441_030 Hb_002621_020--Hb_010139_010 Hb_002621_020--Hb_005656_090 Hb_002621_020--Hb_006364_010 Hb_004693_030--Hb_072368_010 Hb_004693_030--Hb_008159_030 Hb_004693_030--Hb_007441_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.057732 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.118935 0

CAGE analysis