Hb_005228_090

Information

Type -
Description -
Location Contig5228: 90885-99426
Sequence    

Annotation

kegg
ID cit:102626826
description magnesium transporter MRS2-3-like
nr
ID XP_006486900.1
description PREDICTED: magnesium transporter MRS2-3-like [Citrus sinensis]
swissprot
ID -
description -
trembl
ID V4T013
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003981mg PE=4 SV=1
Gene Ontology
ID GO:0044765
description magnesium transporter mrs2-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005228_090 0.0 - - PREDICTED: magnesium transporter MRS2-3-like [Citrus sinensis]
2 Hb_006364_010 0.0006449347 - - -
3 Hb_004693_030 0.0027027082 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
4 Hb_072368_010 0.0053416407 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
5 Hb_000163_310 0.0099084816 - - PREDICTED: ABC transporter C family member 4-like [Malus domestica]
6 Hb_008159_030 0.015003981 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
7 Hb_007441_030 0.0151334583 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
8 Hb_000703_310 0.0179500908 - - -
9 Hb_002621_020 0.0213421614 - - -
10 Hb_000107_460 0.027618967 - - PREDICTED: uncharacterized protein LOC104585930 [Nelumbo nucifera]
11 Hb_010139_010 0.028331485 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
12 Hb_005656_090 0.0293147613 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
13 Hb_001504_290 0.0344707227 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
14 Hb_003724_030 0.0359386424 - - -
15 Hb_000526_130 0.0378728883 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
16 Hb_004918_040 0.043517483 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009230_030 0.0451819657 - - -
18 Hb_003735_010 0.0456443494 - - -
19 Hb_008397_020 0.0457825436 - - polyprotein [Oryza australiensis]
20 Hb_001719_030 0.0464930664 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_005228_090 Hb_005228_090 Hb_006364_010 Hb_006364_010 Hb_005228_090--Hb_006364_010 Hb_004693_030 Hb_004693_030 Hb_005228_090--Hb_004693_030 Hb_072368_010 Hb_072368_010 Hb_005228_090--Hb_072368_010 Hb_000163_310 Hb_000163_310 Hb_005228_090--Hb_000163_310 Hb_008159_030 Hb_008159_030 Hb_005228_090--Hb_008159_030 Hb_007441_030 Hb_007441_030 Hb_005228_090--Hb_007441_030 Hb_006364_010--Hb_004693_030 Hb_006364_010--Hb_072368_010 Hb_006364_010--Hb_000163_310 Hb_006364_010--Hb_007441_030 Hb_006364_010--Hb_008159_030 Hb_004693_030--Hb_072368_010 Hb_004693_030--Hb_008159_030 Hb_004693_030--Hb_000163_310 Hb_004693_030--Hb_007441_030 Hb_072368_010--Hb_008159_030 Hb_072368_010--Hb_000163_310 Hb_072368_010--Hb_007441_030 Hb_000163_310--Hb_007441_030 Hb_000703_310 Hb_000703_310 Hb_000163_310--Hb_000703_310 Hb_002621_020 Hb_002621_020 Hb_000163_310--Hb_002621_020 Hb_000107_460 Hb_000107_460 Hb_008159_030--Hb_000107_460 Hb_001504_290 Hb_001504_290 Hb_008159_030--Hb_001504_290 Hb_007441_030--Hb_000703_310 Hb_007441_030--Hb_002621_020 Hb_010139_010 Hb_010139_010 Hb_007441_030--Hb_010139_010 Hb_005656_090 Hb_005656_090 Hb_007441_030--Hb_005656_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0215204 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0466062 0

CAGE analysis