Hb_008159_030

Information

Type -
Description -
Location Contig8159: 45770-46099
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022768mg
description hypothetical protein
nr
ID KJB23230.1
description hypothetical protein B456_004G088300 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2RVT2
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G088300 PE=4 SV=1
Gene Ontology
ID GO:0016787
description casein kinase i-2-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008159_030 0.0 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
2 Hb_072368_010 0.009662701 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
3 Hb_004693_030 0.0123015044 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
4 Hb_000107_460 0.0126174848 - - PREDICTED: uncharacterized protein LOC104585930 [Nelumbo nucifera]
5 Hb_005228_090 0.015003981 - - PREDICTED: magnesium transporter MRS2-3-like [Citrus sinensis]
6 Hb_006364_010 0.0156488457 - - -
7 Hb_001504_290 0.0194715938 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
8 Hb_003724_030 0.0209401111 - - -
9 Hb_000526_130 0.0228751955 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
10 Hb_000163_310 0.024910767 - - PREDICTED: ABC transporter C family member 4-like [Malus domestica]
11 Hb_007441_030 0.0301343245 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
12 Hb_009230_030 0.0301879721 - - -
13 Hb_000703_310 0.0329500444 - - -
14 Hb_002621_020 0.0363408806 - - -
15 Hb_000866_480 0.0388523671 - - -
16 Hb_022693_100 0.0397278278 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
17 Hb_010139_010 0.0433272007 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
18 Hb_005656_090 0.0443100053 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
19 Hb_006810_080 0.044678139 - - hypothetical protein EUGRSUZ_C015472, partial [Eucalyptus grandis]
20 Hb_176138_010 0.0449171743 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]

Gene co-expression network

sample Hb_008159_030 Hb_008159_030 Hb_072368_010 Hb_072368_010 Hb_008159_030--Hb_072368_010 Hb_004693_030 Hb_004693_030 Hb_008159_030--Hb_004693_030 Hb_000107_460 Hb_000107_460 Hb_008159_030--Hb_000107_460 Hb_005228_090 Hb_005228_090 Hb_008159_030--Hb_005228_090 Hb_006364_010 Hb_006364_010 Hb_008159_030--Hb_006364_010 Hb_001504_290 Hb_001504_290 Hb_008159_030--Hb_001504_290 Hb_072368_010--Hb_004693_030 Hb_072368_010--Hb_005228_090 Hb_072368_010--Hb_006364_010 Hb_000163_310 Hb_000163_310 Hb_072368_010--Hb_000163_310 Hb_007441_030 Hb_007441_030 Hb_072368_010--Hb_007441_030 Hb_004693_030--Hb_005228_090 Hb_004693_030--Hb_006364_010 Hb_004693_030--Hb_000163_310 Hb_004693_030--Hb_007441_030 Hb_000107_460--Hb_001504_290 Hb_003724_030 Hb_003724_030 Hb_000107_460--Hb_003724_030 Hb_000526_130 Hb_000526_130 Hb_000107_460--Hb_000526_130 Hb_009230_030 Hb_009230_030 Hb_000107_460--Hb_009230_030 Hb_000107_460--Hb_072368_010 Hb_005228_090--Hb_006364_010 Hb_005228_090--Hb_000163_310 Hb_005228_090--Hb_007441_030 Hb_006364_010--Hb_000163_310 Hb_006364_010--Hb_007441_030 Hb_001504_290--Hb_003724_030 Hb_001504_290--Hb_000526_130 Hb_001504_290--Hb_009230_030 Hb_000866_480 Hb_000866_480 Hb_001504_290--Hb_000866_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.226865 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.530408 0

CAGE analysis