Hb_006478_190

Information

Type -
Description -
Location Contig6478: 129697-133923
Sequence    

Annotation

kegg
ID rcu:RCOM_0646560
description lipid binding protein, putative
nr
ID XP_002524759.1
description lipid binding protein, putative [Ricinus communis]
swissprot
ID Q9ZQI8
description Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1
trembl
ID B9SFJ0
description Lipid binding protein, putative OS=Ricinus communis GN=RCOM_0646560 PE=4 SV=1
Gene Ontology
ID GO:0008289
description non-specific lipid-transfer protein at2g13820

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52413: 129870-131033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006478_190 0.0 - - lipid binding protein, putative [Ricinus communis]
2 Hb_031862_240 0.0422071597 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
3 Hb_000329_410 0.0560344362 - - Beta-expansin 3 precursor, putative [Ricinus communis]
4 Hb_021931_030 0.0623163533 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
5 Hb_161981_020 0.0626183772 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_110822_020 0.063351466 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
7 Hb_002081_250 0.0634544231 - - hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
8 Hb_170761_010 0.0634733608 - - PREDICTED: uncharacterized protein LOC105787794 [Gossypium raimondii]
9 Hb_000286_250 0.0635877926 desease resistance Gene Name: NB-ARC -
10 Hb_006124_010 0.063636278 - - -
11 Hb_002200_010 0.0639503283 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
12 Hb_000057_030 0.0640609414 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_176138_010 0.0671972791 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
14 Hb_006810_080 0.0672870476 - - hypothetical protein EUGRSUZ_C015472, partial [Eucalyptus grandis]
15 Hb_011495_020 0.0679003657 - - Pectinesterase-2 precursor, putative [Ricinus communis]
16 Hb_022693_100 0.0693045525 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
17 Hb_000905_140 0.0696459312 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
18 Hb_000866_480 0.0696916661 - - -
19 Hb_012019_030 0.0701144995 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
20 Hb_001114_300 0.0714043717 - - hypothetical protein JCGZ_24970 [Jatropha curcas]

Gene co-expression network

sample Hb_006478_190 Hb_006478_190 Hb_031862_240 Hb_031862_240 Hb_006478_190--Hb_031862_240 Hb_000329_410 Hb_000329_410 Hb_006478_190--Hb_000329_410 Hb_021931_030 Hb_021931_030 Hb_006478_190--Hb_021931_030 Hb_161981_020 Hb_161981_020 Hb_006478_190--Hb_161981_020 Hb_110822_020 Hb_110822_020 Hb_006478_190--Hb_110822_020 Hb_002081_250 Hb_002081_250 Hb_006478_190--Hb_002081_250 Hb_006124_010 Hb_006124_010 Hb_031862_240--Hb_006124_010 Hb_031862_240--Hb_161981_020 Hb_031862_240--Hb_021931_030 Hb_176138_010 Hb_176138_010 Hb_031862_240--Hb_176138_010 Hb_006810_080 Hb_006810_080 Hb_031862_240--Hb_006810_080 Hb_000905_140 Hb_000905_140 Hb_000329_410--Hb_000905_140 Hb_011495_020 Hb_011495_020 Hb_000329_410--Hb_011495_020 Hb_001114_300 Hb_001114_300 Hb_000329_410--Hb_001114_300 Hb_000057_030 Hb_000057_030 Hb_000329_410--Hb_000057_030 Hb_002200_010 Hb_002200_010 Hb_000329_410--Hb_002200_010 Hb_180483_010 Hb_180483_010 Hb_000329_410--Hb_180483_010 Hb_021931_030--Hb_161981_020 Hb_021931_030--Hb_006124_010 Hb_021931_030--Hb_110822_020 Hb_021931_030--Hb_002081_250 Hb_170761_010 Hb_170761_010 Hb_021931_030--Hb_170761_010 Hb_000286_250 Hb_000286_250 Hb_021931_030--Hb_000286_250 Hb_161981_020--Hb_006124_010 Hb_161981_020--Hb_110822_020 Hb_161981_020--Hb_002081_250 Hb_161981_020--Hb_170761_010 Hb_161981_020--Hb_176138_010 Hb_110822_020--Hb_002081_250 Hb_110822_020--Hb_170761_010 Hb_110822_020--Hb_000286_250 Hb_110822_020--Hb_002200_010 Hb_110822_020--Hb_000057_030 Hb_002081_250--Hb_170761_010 Hb_002081_250--Hb_000286_250 Hb_002081_250--Hb_002200_010 Hb_002081_250--Hb_000057_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.42928 0.0364126 0.0127221 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.8676 0

CAGE analysis