Hb_000035_300

Information

Type -
Description -
Location Contig35: 335746-336745
Sequence    

Annotation

kegg
ID rcu:RCOM_1375760
description hypothetical protein
nr
ID XP_002523770.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SCQ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1375760 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36434: 336449-336561
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_300 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000512_080 0.1326206807 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_015912_010 0.1335645996 - - cytochrome P450, putative [Ricinus communis]
4 Hb_000291_020 0.1461993532 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
5 Hb_001481_030 0.1479907461 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_002787_100 0.1520983789 - - PREDICTED: uncharacterized protein LOC105637209 [Jatropha curcas]
7 Hb_005306_040 0.1545882115 - - calmodulin binding protein, putative [Ricinus communis]
8 Hb_003636_010 0.1559126835 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
9 Hb_003752_130 0.1588877462 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
10 Hb_124207_010 0.1612664633 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000223_050 0.1634398825 - - PREDICTED: endochitinase A-like [Jatropha curcas]
12 Hb_012702_020 0.1645667357 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
13 Hb_166257_010 0.1691291551 - - hypothetical protein JCGZ_21808 [Jatropha curcas]
14 Hb_000343_280 0.1726633609 - - hypothetical protein JCGZ_24094 [Jatropha curcas]
15 Hb_151281_010 0.1779556213 - - PREDICTED: LOW QUALITY PROTEIN: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
16 Hb_000101_060 0.1789725366 - - -
17 Hb_001514_100 0.1802624342 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
18 Hb_007773_030 0.1803208235 - - -
19 Hb_002400_250 0.1806044827 - - amino acid binding protein, putative [Ricinus communis]
20 Hb_002481_070 0.1810486816 - - hypothetical protein JCGZ_18787 [Jatropha curcas]

Gene co-expression network

sample Hb_000035_300 Hb_000035_300 Hb_000512_080 Hb_000512_080 Hb_000035_300--Hb_000512_080 Hb_015912_010 Hb_015912_010 Hb_000035_300--Hb_015912_010 Hb_000291_020 Hb_000291_020 Hb_000035_300--Hb_000291_020 Hb_001481_030 Hb_001481_030 Hb_000035_300--Hb_001481_030 Hb_002787_100 Hb_002787_100 Hb_000035_300--Hb_002787_100 Hb_005306_040 Hb_005306_040 Hb_000035_300--Hb_005306_040 Hb_003636_010 Hb_003636_010 Hb_000512_080--Hb_003636_010 Hb_000223_050 Hb_000223_050 Hb_000512_080--Hb_000223_050 Hb_152718_010 Hb_152718_010 Hb_000512_080--Hb_152718_010 Hb_001514_100 Hb_001514_100 Hb_000512_080--Hb_001514_100 Hb_000265_020 Hb_000265_020 Hb_000512_080--Hb_000265_020 Hb_002085_070 Hb_002085_070 Hb_000512_080--Hb_002085_070 Hb_012702_020 Hb_012702_020 Hb_015912_010--Hb_012702_020 Hb_000101_060 Hb_000101_060 Hb_015912_010--Hb_000101_060 Hb_003752_130 Hb_003752_130 Hb_015912_010--Hb_003752_130 Hb_002400_250 Hb_002400_250 Hb_015912_010--Hb_002400_250 Hb_166257_010 Hb_166257_010 Hb_015912_010--Hb_166257_010 Hb_000291_020--Hb_002787_100 Hb_124207_010 Hb_124207_010 Hb_000291_020--Hb_124207_010 Hb_000523_060 Hb_000523_060 Hb_000291_020--Hb_000523_060 Hb_012553_010 Hb_012553_010 Hb_000291_020--Hb_012553_010 Hb_000291_020--Hb_166257_010 Hb_002481_070 Hb_002481_070 Hb_000291_020--Hb_002481_070 Hb_000720_110 Hb_000720_110 Hb_001481_030--Hb_000720_110 Hb_001424_080 Hb_001424_080 Hb_001481_030--Hb_001424_080 Hb_001481_030--Hb_000223_050 Hb_001481_030--Hb_005306_040 Hb_034342_010 Hb_034342_010 Hb_001481_030--Hb_034342_010 Hb_001481_030--Hb_000512_080 Hb_002787_100--Hb_000523_060 Hb_002787_100--Hb_124207_010 Hb_002787_100--Hb_002481_070 Hb_002787_100--Hb_012553_010 Hb_000878_150 Hb_000878_150 Hb_002787_100--Hb_000878_150 Hb_000343_280 Hb_000343_280 Hb_005306_040--Hb_000343_280 Hb_005306_040--Hb_000720_110 Hb_055147_010 Hb_055147_010 Hb_005306_040--Hb_055147_010 Hb_100873_040 Hb_100873_040 Hb_005306_040--Hb_100873_040 Hb_000692_180 Hb_000692_180 Hb_005306_040--Hb_000692_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0312943 2.11597 0.500558 0.0847633 0.0250696 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.12669 0

CAGE analysis