Hb_009297_010

Information

Type -
Description -
Location Contig9297: 11210-11938
Sequence    

Annotation

kegg
ID rcu:RCOM_1296800
description leucine-rich repeat-containing protein, putative
nr
ID XP_002519358.1
description leucine-rich repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9SZ67
description Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1
trembl
ID B9S039
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1296800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009297_010 0.0 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
2 Hb_166257_010 0.0808699493 - - hypothetical protein JCGZ_21808 [Jatropha curcas]
3 Hb_008062_020 0.0835201175 - - PREDICTED: periaxin-like [Populus euphratica]
4 Hb_049562_010 0.1103950075 - - hypothetical protein JCGZ_25442 [Jatropha curcas]
5 Hb_000238_010 0.1143962172 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_002154_090 0.1145417746 - - -
7 Hb_154646_010 0.1145624584 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
8 Hb_001817_070 0.1148440882 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000135_040 0.1159245744 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
10 Hb_008953_020 0.1159580188 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
11 Hb_008221_010 0.1169180174 - - hypothetical protein JCGZ_10961 [Jatropha curcas]
12 Hb_013654_020 0.1177527605 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
13 Hb_048653_010 0.1177875489 - - PREDICTED: mavicyanin [Jatropha curcas]
14 Hb_042239_010 0.1181032431 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
15 Hb_175426_010 0.1187106952 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
16 Hb_000370_050 0.1192646587 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_003702_020 0.1192748907 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
18 Hb_008092_010 0.1194035109 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
19 Hb_007592_010 0.1200463985 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
20 Hb_005426_010 0.1200938991 - - polyprotein [Oryza australiensis]

Gene co-expression network

sample Hb_009297_010 Hb_009297_010 Hb_166257_010 Hb_166257_010 Hb_009297_010--Hb_166257_010 Hb_008062_020 Hb_008062_020 Hb_009297_010--Hb_008062_020 Hb_049562_010 Hb_049562_010 Hb_009297_010--Hb_049562_010 Hb_000238_010 Hb_000238_010 Hb_009297_010--Hb_000238_010 Hb_002154_090 Hb_002154_090 Hb_009297_010--Hb_002154_090 Hb_154646_010 Hb_154646_010 Hb_009297_010--Hb_154646_010 Hb_124207_010 Hb_124207_010 Hb_166257_010--Hb_124207_010 Hb_012553_010 Hb_012553_010 Hb_166257_010--Hb_012553_010 Hb_000101_060 Hb_000101_060 Hb_166257_010--Hb_000101_060 Hb_000291_020 Hb_000291_020 Hb_166257_010--Hb_000291_020 Hb_001268_070 Hb_001268_070 Hb_166257_010--Hb_001268_070 Hb_005649_120 Hb_005649_120 Hb_008062_020--Hb_005649_120 Hb_007627_020 Hb_007627_020 Hb_008062_020--Hb_007627_020 Hb_030602_030 Hb_030602_030 Hb_008062_020--Hb_030602_030 Hb_005673_010 Hb_005673_010 Hb_008062_020--Hb_005673_010 Hb_068533_010 Hb_068533_010 Hb_008062_020--Hb_068533_010 Hb_004458_020 Hb_004458_020 Hb_008062_020--Hb_004458_020 Hb_049562_010--Hb_005649_120 Hb_175426_010 Hb_175426_010 Hb_049562_010--Hb_175426_010 Hb_001080_040 Hb_001080_040 Hb_049562_010--Hb_001080_040 Hb_049562_010--Hb_002154_090 Hb_049562_010--Hb_000238_010 Hb_049562_010--Hb_007627_020 Hb_000238_010--Hb_002154_090 Hb_000238_010--Hb_154646_010 Hb_001817_070 Hb_001817_070 Hb_000238_010--Hb_001817_070 Hb_000238_010--Hb_175426_010 Hb_000135_040 Hb_000135_040 Hb_000238_010--Hb_000135_040 Hb_008953_020 Hb_008953_020 Hb_000238_010--Hb_008953_020 Hb_002154_090--Hb_154646_010 Hb_002154_090--Hb_001817_070 Hb_002154_090--Hb_175426_010 Hb_002154_090--Hb_000135_040 Hb_002154_090--Hb_008953_020 Hb_154646_010--Hb_001817_070 Hb_154646_010--Hb_000135_040 Hb_154646_010--Hb_008953_020 Hb_008221_010 Hb_008221_010 Hb_154646_010--Hb_008221_010 Hb_013654_020 Hb_013654_020 Hb_154646_010--Hb_013654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.841934 0.0339347 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.438673 0

CAGE analysis