Hb_006452_050

Information

Type -
Description -
Location Contig6452: 25084-26213
Sequence    

Annotation

kegg
ID pop:POPTR_0005s24080g
description POPTRDRAFT_205711; hypothetical protein
nr
ID XP_012092094.1
description PREDICTED: GABA transporter 1-like [Jatropha curcas]
swissprot
ID F4HW02
description GABA transporter 1 OS=Arabidopsis thaliana GN=GAT1 PE=1 SV=1
trembl
ID A0A067JBY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21827 PE=4 SV=1
Gene Ontology
ID GO:0016021
description gaba transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52296: 25146-25860 , PASA_asmbl_52297: 25861-26160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_050 0.0 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
2 Hb_012019_020 0.1221917545 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
3 Hb_002234_150 0.1240281076 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
4 Hb_112082_030 0.1329146319 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
5 Hb_000101_050 0.1334147413 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
6 Hb_000411_060 0.1370230234 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
7 Hb_000976_020 0.1390321026 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
8 Hb_000522_040 0.1408493956 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
9 Hb_007875_070 0.1422006551 - - hypothetical protein JCGZ_05017 [Jatropha curcas]
10 Hb_132880_030 0.1444203373 - - hypothetical protein JCGZ_10325 [Jatropha curcas]
11 Hb_001357_260 0.1460248182 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_000487_170 0.1464854214 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
13 Hb_041769_010 0.1471260232 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
14 Hb_001013_040 0.1473807943 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
15 Hb_110218_010 0.1474345096 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
16 Hb_001952_110 0.1481156182 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
17 Hb_002890_400 0.1489174384 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
18 Hb_006446_060 0.1490627067 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
19 Hb_001902_180 0.1497770159 - - PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
20 Hb_009012_020 0.1525933891 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]

Gene co-expression network

sample Hb_006452_050 Hb_006452_050 Hb_012019_020 Hb_012019_020 Hb_006452_050--Hb_012019_020 Hb_002234_150 Hb_002234_150 Hb_006452_050--Hb_002234_150 Hb_112082_030 Hb_112082_030 Hb_006452_050--Hb_112082_030 Hb_000101_050 Hb_000101_050 Hb_006452_050--Hb_000101_050 Hb_000411_060 Hb_000411_060 Hb_006452_050--Hb_000411_060 Hb_000976_020 Hb_000976_020 Hb_006452_050--Hb_000976_020 Hb_001013_040 Hb_001013_040 Hb_012019_020--Hb_001013_040 Hb_001596_040 Hb_001596_040 Hb_012019_020--Hb_001596_040 Hb_012019_020--Hb_000101_050 Hb_001952_110 Hb_001952_110 Hb_012019_020--Hb_001952_110 Hb_007875_070 Hb_007875_070 Hb_012019_020--Hb_007875_070 Hb_001080_310 Hb_001080_310 Hb_002234_150--Hb_001080_310 Hb_002311_050 Hb_002311_050 Hb_002234_150--Hb_002311_050 Hb_041769_010 Hb_041769_010 Hb_002234_150--Hb_041769_010 Hb_000365_300 Hb_000365_300 Hb_002234_150--Hb_000365_300 Hb_005731_080 Hb_005731_080 Hb_002234_150--Hb_005731_080 Hb_000251_100 Hb_000251_100 Hb_002234_150--Hb_000251_100 Hb_001357_260 Hb_001357_260 Hb_112082_030--Hb_001357_260 Hb_000189_260 Hb_000189_260 Hb_112082_030--Hb_000189_260 Hb_002917_010 Hb_002917_010 Hb_112082_030--Hb_002917_010 Hb_008406_010 Hb_008406_010 Hb_112082_030--Hb_008406_010 Hb_005511_050 Hb_005511_050 Hb_112082_030--Hb_005511_050 Hb_002890_400 Hb_002890_400 Hb_112082_030--Hb_002890_400 Hb_006446_060 Hb_006446_060 Hb_000101_050--Hb_006446_060 Hb_000101_050--Hb_041769_010 Hb_001902_180 Hb_001902_180 Hb_000101_050--Hb_001902_180 Hb_005993_070 Hb_005993_070 Hb_000101_050--Hb_005993_070 Hb_000101_050--Hb_005731_080 Hb_059162_010 Hb_059162_010 Hb_000101_050--Hb_059162_010 Hb_009012_020 Hb_009012_020 Hb_000411_060--Hb_009012_020 Hb_000487_170 Hb_000487_170 Hb_000411_060--Hb_000487_170 Hb_000411_060--Hb_001902_180 Hb_000411_060--Hb_000101_050 Hb_008080_040 Hb_008080_040 Hb_000411_060--Hb_008080_040 Hb_000411_060--Hb_001357_260 Hb_008225_080 Hb_008225_080 Hb_000976_020--Hb_008225_080 Hb_000758_030 Hb_000758_030 Hb_000976_020--Hb_000758_030 Hb_000976_020--Hb_001357_260 Hb_000976_020--Hb_000189_260 Hb_002965_020 Hb_002965_020 Hb_000976_020--Hb_002965_020 Hb_020332_040 Hb_020332_040 Hb_000976_020--Hb_020332_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.26309 0.193337 0.121584 0 0.0365838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.149812 0 4.3829 0.145845

CAGE analysis