Hb_008406_010

Information

Type -
Description -
Location Contig8406: 18139-20358
Sequence    

Annotation

kegg
ID pop:POPTR_0017s04600g
description aminotransferase-related family protein
nr
ID XP_011029066.1
description PREDICTED: tyrosine aminotransferase-like [Populus euphratica]
swissprot
ID Q9LVY1
description Tyrosine aminotransferase OS=Arabidopsis thaliana GN=TAT PE=2 SV=1
trembl
ID U5FHW7
description Aminotransferase-related family protein OS=Populus trichocarpa GN=POPTR_0017s04600g PE=4 SV=1
Gene Ontology
ID GO:0008483
description tyrosine aminotransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60098: 20962-24717
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008406_010 0.0 - - PREDICTED: tyrosine aminotransferase-like [Populus euphratica]
2 Hb_008225_080 0.1120786651 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
3 Hb_002232_370 0.1126094174 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
4 Hb_000245_140 0.1139322259 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
5 Hb_000758_030 0.1143564347 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
6 Hb_112082_030 0.1151324354 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
7 Hb_001357_260 0.116524145 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
8 Hb_000976_020 0.1256436281 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
9 Hb_000984_080 0.1354454917 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
10 Hb_002110_270 0.1364104331 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
11 Hb_000189_260 0.1374168304 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002965_020 0.1374358097 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
13 Hb_006006_070 0.1409914762 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_003052_070 0.1434295815 - - PREDICTED: peroxidase 11 [Jatropha curcas]
15 Hb_020332_040 0.1462033029 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
16 Hb_076895_020 0.1467647566 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
17 Hb_002900_070 0.14683223 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002048_010 0.1468641833 - - unknown [Lotus japonicus]
19 Hb_001328_110 0.1469280665 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
20 Hb_012796_050 0.1469912819 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_008406_010 Hb_008406_010 Hb_008225_080 Hb_008225_080 Hb_008406_010--Hb_008225_080 Hb_002232_370 Hb_002232_370 Hb_008406_010--Hb_002232_370 Hb_000245_140 Hb_000245_140 Hb_008406_010--Hb_000245_140 Hb_000758_030 Hb_000758_030 Hb_008406_010--Hb_000758_030 Hb_112082_030 Hb_112082_030 Hb_008406_010--Hb_112082_030 Hb_001357_260 Hb_001357_260 Hb_008406_010--Hb_001357_260 Hb_008225_080--Hb_000758_030 Hb_007875_070 Hb_007875_070 Hb_008225_080--Hb_007875_070 Hb_000976_020 Hb_000976_020 Hb_008225_080--Hb_000976_020 Hb_000984_080 Hb_000984_080 Hb_008225_080--Hb_000984_080 Hb_002110_270 Hb_002110_270 Hb_008225_080--Hb_002110_270 Hb_006006_070 Hb_006006_070 Hb_008225_080--Hb_006006_070 Hb_002232_370--Hb_000245_140 Hb_000438_190 Hb_000438_190 Hb_002232_370--Hb_000438_190 Hb_148914_010 Hb_148914_010 Hb_002232_370--Hb_148914_010 Hb_002965_020 Hb_002965_020 Hb_002232_370--Hb_002965_020 Hb_002232_400 Hb_002232_400 Hb_002232_370--Hb_002232_400 Hb_012796_050 Hb_012796_050 Hb_002232_370--Hb_012796_050 Hb_000245_140--Hb_002965_020 Hb_000245_140--Hb_148914_010 Hb_000245_140--Hb_000976_020 Hb_000648_120 Hb_000648_120 Hb_000245_140--Hb_000648_120 Hb_000563_610 Hb_000563_610 Hb_000245_140--Hb_000563_610 Hb_000758_030--Hb_002110_270 Hb_000758_030--Hb_006006_070 Hb_076895_020 Hb_076895_020 Hb_000758_030--Hb_076895_020 Hb_000758_030--Hb_000976_020 Hb_000539_080 Hb_000539_080 Hb_000758_030--Hb_000539_080 Hb_112082_030--Hb_001357_260 Hb_000189_260 Hb_000189_260 Hb_112082_030--Hb_000189_260 Hb_002917_010 Hb_002917_010 Hb_112082_030--Hb_002917_010 Hb_005511_050 Hb_005511_050 Hb_112082_030--Hb_005511_050 Hb_002890_400 Hb_002890_400 Hb_112082_030--Hb_002890_400 Hb_001357_260--Hb_002917_010 Hb_001357_260--Hb_000976_020 Hb_001357_260--Hb_002965_020 Hb_004586_080 Hb_004586_080 Hb_001357_260--Hb_004586_080 Hb_000327_300 Hb_000327_300 Hb_001357_260--Hb_000327_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.650569 0.203525 0.309418 0.0133385 0.0132813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0606428 0.071565 0 3.8741 0.0499587

CAGE analysis