Hb_000522_040

Information

Type -
Description -
Location Contig522: 20023-21451
Sequence    

Annotation

kegg
ID rcu:RCOM_0491920
description Desacetoxyvindoline 4-hydroxylase, putative (EC:1.14.11.20)
nr
ID XP_002529304.1
description Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
swissprot
ID Q84MB3
description 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1
trembl
ID B9STI5
description Desacetoxyvindoline 4-hydroxylase, putative OS=Ricinus communis GN=RCOM_0491920 PE=3 SV=1
Gene Ontology
ID GO:0005506
description desacetoxyvindoline 4-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000522_040 0.0 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
2 Hb_001621_140 0.1054986594 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
3 Hb_005653_020 0.1114191787 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
4 Hb_006446_060 0.1154393889 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
5 Hb_002234_150 0.1179198788 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
6 Hb_000251_100 0.1179288646 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_009012_020 0.1209752946 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
8 Hb_010931_010 0.1211833777 - - PREDICTED: protein YLS9-like [Jatropha curcas]
9 Hb_161393_010 0.123140818 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_001902_180 0.1240171325 - - PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
11 Hb_041769_010 0.1257989688 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
12 Hb_003677_010 0.1284357035 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
13 Hb_000976_020 0.1320348742 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
14 Hb_000101_050 0.1327558144 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
15 Hb_002553_120 0.1345576752 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
16 Hb_000939_030 0.1356458839 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
17 Hb_001080_310 0.1372128433 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
18 Hb_110218_010 0.1378776031 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
19 Hb_002890_400 0.1383349274 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
20 Hb_006452_050 0.1408493956 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000522_040 Hb_000522_040 Hb_001621_140 Hb_001621_140 Hb_000522_040--Hb_001621_140 Hb_005653_020 Hb_005653_020 Hb_000522_040--Hb_005653_020 Hb_006446_060 Hb_006446_060 Hb_000522_040--Hb_006446_060 Hb_002234_150 Hb_002234_150 Hb_000522_040--Hb_002234_150 Hb_000251_100 Hb_000251_100 Hb_000522_040--Hb_000251_100 Hb_009012_020 Hb_009012_020 Hb_000522_040--Hb_009012_020 Hb_001621_140--Hb_006446_060 Hb_161393_010 Hb_161393_010 Hb_001621_140--Hb_161393_010 Hb_001621_140--Hb_005653_020 Hb_041769_010 Hb_041769_010 Hb_001621_140--Hb_041769_010 Hb_002081_040 Hb_002081_040 Hb_001621_140--Hb_002081_040 Hb_003074_070 Hb_003074_070 Hb_001621_140--Hb_003074_070 Hb_005653_020--Hb_161393_010 Hb_005653_020--Hb_006446_060 Hb_002553_120 Hb_002553_120 Hb_005653_020--Hb_002553_120 Hb_005653_020--Hb_002081_040 Hb_005653_020--Hb_041769_010 Hb_000101_050 Hb_000101_050 Hb_006446_060--Hb_000101_050 Hb_006446_060--Hb_041769_010 Hb_005993_070 Hb_005993_070 Hb_006446_060--Hb_005993_070 Hb_006446_060--Hb_161393_010 Hb_001080_310 Hb_001080_310 Hb_002234_150--Hb_001080_310 Hb_002311_050 Hb_002311_050 Hb_002234_150--Hb_002311_050 Hb_002234_150--Hb_041769_010 Hb_000365_300 Hb_000365_300 Hb_002234_150--Hb_000365_300 Hb_005731_080 Hb_005731_080 Hb_002234_150--Hb_005731_080 Hb_002234_150--Hb_000251_100 Hb_000251_100--Hb_001080_310 Hb_005511_050 Hb_005511_050 Hb_000251_100--Hb_005511_050 Hb_002758_040 Hb_002758_040 Hb_000251_100--Hb_002758_040 Hb_004185_040 Hb_004185_040 Hb_000251_100--Hb_004185_040 Hb_004195_040 Hb_004195_040 Hb_000251_100--Hb_004195_040 Hb_001902_180 Hb_001902_180 Hb_009012_020--Hb_001902_180 Hb_000046_060 Hb_000046_060 Hb_009012_020--Hb_000046_060 Hb_110218_010 Hb_110218_010 Hb_009012_020--Hb_110218_010 Hb_004463_040 Hb_004463_040 Hb_009012_020--Hb_004463_040 Hb_000684_020 Hb_000684_020 Hb_009012_020--Hb_000684_020 Hb_000411_060 Hb_000411_060 Hb_009012_020--Hb_000411_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.194085 9.11698 0.316099 1.44582 0 0.233164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.259738 0.136204 0.0631628 28.907 0.983506

CAGE analysis