Hb_000046_060

Information

Type -
Description -
Location Contig46: 55887-59466
Sequence    

Annotation

kegg
ID rcu:RCOM_0679120
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_002516838.1
description sugar transporter, putative [Ricinus communis]
swissprot
ID Q8LBI9
description Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2
trembl
ID B9RSW9
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_0679120 PE=3 SV=1
Gene Ontology
ID GO:0016020
description sugar transporter erd6-like 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43602: 57566-57800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_060 0.0 - - sugar transporter, putative [Ricinus communis]
2 Hb_009012_020 0.0891684757 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
3 Hb_108884_020 0.1092136964 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
4 Hb_004190_010 0.1197421455 - - unnamed protein product [Vitis vinifera]
5 Hb_000130_210 0.1326935695 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
6 Hb_004463_040 0.1342923616 - - -
7 Hb_000666_020 0.134388414 - - Major latex protein, putative [Ricinus communis]
8 Hb_001902_180 0.1355749091 - - PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
9 Hb_003900_050 0.136885257 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
10 Hb_000189_260 0.1407644819 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000684_020 0.1432576879 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
12 Hb_002890_400 0.1436690824 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
13 Hb_000522_040 0.1439606151 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
14 Hb_002837_140 0.1463366739 - - hypothetical protein JCGZ_05022 [Jatropha curcas]
15 Hb_110218_010 0.1466292726 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
16 Hb_020581_020 0.1470188872 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
17 Hb_064398_010 0.1474236108 - - cytochrome P450, putative [Ricinus communis]
18 Hb_011282_070 0.1481734423 - - ATP binding protein, putative [Ricinus communis]
19 Hb_004200_040 0.150668473 - - laccase, putative [Ricinus communis]
20 Hb_021419_060 0.1520531671 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000046_060 Hb_000046_060 Hb_009012_020 Hb_009012_020 Hb_000046_060--Hb_009012_020 Hb_108884_020 Hb_108884_020 Hb_000046_060--Hb_108884_020 Hb_004190_010 Hb_004190_010 Hb_000046_060--Hb_004190_010 Hb_000130_210 Hb_000130_210 Hb_000046_060--Hb_000130_210 Hb_004463_040 Hb_004463_040 Hb_000046_060--Hb_004463_040 Hb_000666_020 Hb_000666_020 Hb_000046_060--Hb_000666_020 Hb_001902_180 Hb_001902_180 Hb_009012_020--Hb_001902_180 Hb_110218_010 Hb_110218_010 Hb_009012_020--Hb_110218_010 Hb_009012_020--Hb_004463_040 Hb_000684_020 Hb_000684_020 Hb_009012_020--Hb_000684_020 Hb_000411_060 Hb_000411_060 Hb_009012_020--Hb_000411_060 Hb_000608_450 Hb_000608_450 Hb_108884_020--Hb_000608_450 Hb_108884_020--Hb_009012_020 Hb_000286_190 Hb_000286_190 Hb_108884_020--Hb_000286_190 Hb_108884_020--Hb_004190_010 Hb_108884_020--Hb_000684_020 Hb_000907_190 Hb_000907_190 Hb_004190_010--Hb_000907_190 Hb_004200_040 Hb_004200_040 Hb_004190_010--Hb_004200_040 Hb_000140_260 Hb_000140_260 Hb_004190_010--Hb_000140_260 Hb_003900_050 Hb_003900_050 Hb_004190_010--Hb_003900_050 Hb_012660_010 Hb_012660_010 Hb_004190_010--Hb_012660_010 Hb_004190_010--Hb_004463_040 Hb_020581_020 Hb_020581_020 Hb_000130_210--Hb_020581_020 Hb_000130_210--Hb_108884_020 Hb_000130_210--Hb_004190_010 Hb_000130_210--Hb_000666_020 Hb_002837_140 Hb_002837_140 Hb_000130_210--Hb_002837_140 Hb_004463_040--Hb_003900_050 Hb_004463_040--Hb_004200_040 Hb_000976_020 Hb_000976_020 Hb_004463_040--Hb_000976_020 Hb_020332_040 Hb_020332_040 Hb_004463_040--Hb_020332_040 Hb_002048_010 Hb_002048_010 Hb_004463_040--Hb_002048_010 Hb_137695_010 Hb_137695_010 Hb_000666_020--Hb_137695_010 Hb_000666_020--Hb_002837_140 Hb_115007_010 Hb_115007_010 Hb_000666_020--Hb_115007_010 Hb_015227_010 Hb_015227_010 Hb_000666_020--Hb_015227_010 Hb_011282_070 Hb_011282_070 Hb_000666_020--Hb_011282_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0129217 2.15494 0.0384414 0.215214 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0294225 0.0462961 0.0435745 9.24265 0.970582

CAGE analysis