Hb_108884_020

Information

Type -
Description -
Location Contig108884: 6471-7422
Sequence    

Annotation

kegg
ID tcc:TCM_026075
description RmlC-like cupins superfamily protein
nr
ID KDP23769.1
description hypothetical protein JCGZ_23602 [Jatropha curcas]
swissprot
ID P92997
description Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=2
trembl
ID A0A067JW67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23602 PE=4 SV=1
Gene Ontology
ID GO:0046872
description germin-like protein subfamily 1 member 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108884_020 0.0 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
2 Hb_000608_450 0.1033134311 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
3 Hb_000046_060 0.1092136964 - - sugar transporter, putative [Ricinus communis]
4 Hb_009012_020 0.1178089886 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
5 Hb_000286_190 0.1259555339 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
6 Hb_004190_010 0.1347506807 - - unnamed protein product [Vitis vinifera]
7 Hb_000684_020 0.1365654258 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
8 Hb_000130_210 0.1367228953 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
9 Hb_020581_020 0.1418467808 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
10 Hb_003900_050 0.1430899431 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
11 Hb_000920_360 0.1440920817 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
12 Hb_011552_020 0.1458918693 - - hypothetical protein F383_28301 [Gossypium arboreum]
13 Hb_001902_180 0.1469772733 - - PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
14 Hb_004200_040 0.1526302931 - - laccase, putative [Ricinus communis]
15 Hb_110218_010 0.1588161931 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
16 Hb_004463_040 0.1603750859 - - -
17 Hb_001864_010 0.160869957 - - conserved hypothetical protein [Ricinus communis]
18 Hb_020581_050 0.1644352506 - - -
19 Hb_002837_140 0.1689590288 - - hypothetical protein JCGZ_05022 [Jatropha curcas]
20 Hb_000666_020 0.1691220021 - - Major latex protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_108884_020 Hb_108884_020 Hb_000608_450 Hb_000608_450 Hb_108884_020--Hb_000608_450 Hb_000046_060 Hb_000046_060 Hb_108884_020--Hb_000046_060 Hb_009012_020 Hb_009012_020 Hb_108884_020--Hb_009012_020 Hb_000286_190 Hb_000286_190 Hb_108884_020--Hb_000286_190 Hb_004190_010 Hb_004190_010 Hb_108884_020--Hb_004190_010 Hb_000684_020 Hb_000684_020 Hb_108884_020--Hb_000684_020 Hb_000920_360 Hb_000920_360 Hb_000608_450--Hb_000920_360 Hb_000608_450--Hb_000286_190 Hb_010926_030 Hb_010926_030 Hb_000608_450--Hb_010926_030 Hb_009510_060 Hb_009510_060 Hb_000608_450--Hb_009510_060 Hb_005797_030 Hb_005797_030 Hb_000608_450--Hb_005797_030 Hb_000046_060--Hb_009012_020 Hb_000046_060--Hb_004190_010 Hb_000130_210 Hb_000130_210 Hb_000046_060--Hb_000130_210 Hb_004463_040 Hb_004463_040 Hb_000046_060--Hb_004463_040 Hb_000666_020 Hb_000666_020 Hb_000046_060--Hb_000666_020 Hb_001902_180 Hb_001902_180 Hb_009012_020--Hb_001902_180 Hb_110218_010 Hb_110218_010 Hb_009012_020--Hb_110218_010 Hb_009012_020--Hb_004463_040 Hb_009012_020--Hb_000684_020 Hb_000411_060 Hb_000411_060 Hb_009012_020--Hb_000411_060 Hb_000286_190--Hb_000920_360 Hb_029508_030 Hb_029508_030 Hb_000286_190--Hb_029508_030 Hb_000286_190--Hb_005797_030 Hb_001864_010 Hb_001864_010 Hb_000286_190--Hb_001864_010 Hb_004574_010 Hb_004574_010 Hb_000286_190--Hb_004574_010 Hb_000907_190 Hb_000907_190 Hb_004190_010--Hb_000907_190 Hb_004200_040 Hb_004200_040 Hb_004190_010--Hb_004200_040 Hb_000140_260 Hb_000140_260 Hb_004190_010--Hb_000140_260 Hb_003900_050 Hb_003900_050 Hb_004190_010--Hb_003900_050 Hb_012660_010 Hb_012660_010 Hb_004190_010--Hb_012660_010 Hb_004190_010--Hb_004463_040 Hb_000684_020--Hb_110218_010 Hb_000684_020--Hb_004200_040 Hb_000684_020--Hb_004463_040 Hb_002553_120 Hb_002553_120 Hb_000684_020--Hb_002553_120 Hb_000684_020--Hb_003900_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.7419 0 0.0813011 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.18337 0.318584

CAGE analysis