Hb_000130_210

Information

Type -
Description -
Location Contig130: 180293-183336
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11340g
description POPTRDRAFT_771759; ABC transporter family protein
nr
ID XP_011029552.1
description PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
swissprot
ID Q9MAH4
description ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1
trembl
ID B9I1V7
description ABC transporter family protein OS=Populus trichocarpa GN=POPTR_0011s11340g PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_210 0.0 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
2 Hb_020581_020 0.1261682076 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
3 Hb_000046_060 0.1326935695 - - sugar transporter, putative [Ricinus communis]
4 Hb_108884_020 0.1367228953 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
5 Hb_004190_010 0.1428697673 - - unnamed protein product [Vitis vinifera]
6 Hb_000666_020 0.1470354749 - - Major latex protein, putative [Ricinus communis]
7 Hb_002837_140 0.1486023592 - - hypothetical protein JCGZ_05022 [Jatropha curcas]
8 Hb_009012_020 0.1495751453 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
9 Hb_137695_010 0.1649523162 - - PREDICTED: wall-associated receptor kinase 2-like [Malus domestica]
10 Hb_003900_050 0.1740979784 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
11 Hb_181968_010 0.1751988147 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
12 Hb_011282_070 0.1773252425 - - ATP binding protein, putative [Ricinus communis]
13 Hb_004463_040 0.1805097462 - - -
14 Hb_110218_010 0.1835738856 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
15 Hb_004200_040 0.188917536 - - laccase, putative [Ricinus communis]
16 Hb_000684_020 0.1899470366 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
17 Hb_021419_060 0.1919744317 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
18 Hb_000608_450 0.1977270719 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
19 Hb_001902_180 0.1983124311 - - PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
20 Hb_064398_010 0.1984993386 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000130_210 Hb_000130_210 Hb_020581_020 Hb_020581_020 Hb_000130_210--Hb_020581_020 Hb_000046_060 Hb_000046_060 Hb_000130_210--Hb_000046_060 Hb_108884_020 Hb_108884_020 Hb_000130_210--Hb_108884_020 Hb_004190_010 Hb_004190_010 Hb_000130_210--Hb_004190_010 Hb_000666_020 Hb_000666_020 Hb_000130_210--Hb_000666_020 Hb_002837_140 Hb_002837_140 Hb_000130_210--Hb_002837_140 Hb_181968_010 Hb_181968_010 Hb_020581_020--Hb_181968_010 Hb_020581_020--Hb_002837_140 Hb_020581_020--Hb_000666_020 Hb_020581_020--Hb_108884_020 Hb_137695_010 Hb_137695_010 Hb_020581_020--Hb_137695_010 Hb_009012_020 Hb_009012_020 Hb_000046_060--Hb_009012_020 Hb_000046_060--Hb_108884_020 Hb_000046_060--Hb_004190_010 Hb_004463_040 Hb_004463_040 Hb_000046_060--Hb_004463_040 Hb_000046_060--Hb_000666_020 Hb_000608_450 Hb_000608_450 Hb_108884_020--Hb_000608_450 Hb_108884_020--Hb_009012_020 Hb_000286_190 Hb_000286_190 Hb_108884_020--Hb_000286_190 Hb_108884_020--Hb_004190_010 Hb_000684_020 Hb_000684_020 Hb_108884_020--Hb_000684_020 Hb_000907_190 Hb_000907_190 Hb_004190_010--Hb_000907_190 Hb_004200_040 Hb_004200_040 Hb_004190_010--Hb_004200_040 Hb_000140_260 Hb_000140_260 Hb_004190_010--Hb_000140_260 Hb_003900_050 Hb_003900_050 Hb_004190_010--Hb_003900_050 Hb_012660_010 Hb_012660_010 Hb_004190_010--Hb_012660_010 Hb_004190_010--Hb_004463_040 Hb_000666_020--Hb_137695_010 Hb_000666_020--Hb_002837_140 Hb_115007_010 Hb_115007_010 Hb_000666_020--Hb_115007_010 Hb_015227_010 Hb_015227_010 Hb_000666_020--Hb_015227_010 Hb_011282_070 Hb_011282_070 Hb_000666_020--Hb_011282_070 Hb_002837_140--Hb_137695_010 Hb_001959_280 Hb_001959_280 Hb_002837_140--Hb_001959_280 Hb_002837_140--Hb_015227_010 Hb_002837_140--Hb_004190_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0105157 0.0626186 0 0.00752678 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.292017 0.0396917

CAGE analysis