Hb_001959_280

Information

Type -
Description -
Location Contig1959: 280995-283117
Sequence    

Annotation

kegg
ID rcu:RCOM_1217180
description calcium ion binding protein, putative
nr
ID XP_012077619.1
description PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
swissprot
ID Q9NZU7
description Calcium-binding protein 1 OS=Homo sapiens GN=CABP1 PE=1 SV=5
trembl
ID B9SQS2
description Calcium ion binding protein, putative OS=Ricinus communis GN=RCOM_1217180 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_280 0.0 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
2 Hb_015227_010 0.0679337503 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
3 Hb_135684_010 0.111445273 - - hypothetical protein [Pseudomonas tolaasii]
4 Hb_002837_140 0.1194759462 - - hypothetical protein JCGZ_05022 [Jatropha curcas]
5 Hb_035726_010 0.1308190842 - - Insulin-degrading enzyme, putative [Ricinus communis]
6 Hb_010866_010 0.1408688252 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
7 Hb_115414_010 0.1447395862 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
8 Hb_001221_120 0.1461716954 - - cytochrome P450, putative [Ricinus communis]
9 Hb_137695_010 0.1462671953 - - PREDICTED: wall-associated receptor kinase 2-like [Malus domestica]
10 Hb_002890_050 0.1463906548 - - -
11 Hb_014034_010 0.1464880577 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_001514_160 0.1470471907 - - hypothetical protein JCGZ_16070 [Jatropha curcas]
13 Hb_009142_030 0.1473207605 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_055880_010 0.1477920688 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_000666_020 0.151766134 - - Major latex protein, putative [Ricinus communis]
16 Hb_159957_020 0.1533936891 - - -
17 Hb_000159_030 0.1539303496 - - putative glycosyltransferase, partial [Aralia elata]
18 Hb_033843_020 0.156686593 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
19 Hb_039791_010 0.1575061797 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like isoform X2 [Jatropha curcas]
20 Hb_035726_020 0.160224576 - - Insulinase (Peptidase family M16) family protein [Theobroma cacao]

Gene co-expression network

sample Hb_001959_280 Hb_001959_280 Hb_015227_010 Hb_015227_010 Hb_001959_280--Hb_015227_010 Hb_135684_010 Hb_135684_010 Hb_001959_280--Hb_135684_010 Hb_002837_140 Hb_002837_140 Hb_001959_280--Hb_002837_140 Hb_035726_010 Hb_035726_010 Hb_001959_280--Hb_035726_010 Hb_010866_010 Hb_010866_010 Hb_001959_280--Hb_010866_010 Hb_115414_010 Hb_115414_010 Hb_001959_280--Hb_115414_010 Hb_015227_010--Hb_135684_010 Hb_137695_010 Hb_137695_010 Hb_015227_010--Hb_137695_010 Hb_015227_010--Hb_002837_140 Hb_015227_010--Hb_010866_010 Hb_000666_020 Hb_000666_020 Hb_015227_010--Hb_000666_020 Hb_000363_020 Hb_000363_020 Hb_135684_010--Hb_000363_020 Hb_135684_010--Hb_010866_010 Hb_135684_010--Hb_137695_010 Hb_169514_010 Hb_169514_010 Hb_135684_010--Hb_169514_010 Hb_002837_140--Hb_000666_020 Hb_002837_140--Hb_137695_010 Hb_004190_010 Hb_004190_010 Hb_002837_140--Hb_004190_010 Hb_020581_020 Hb_020581_020 Hb_002837_140--Hb_020581_020 Hb_033843_020 Hb_033843_020 Hb_035726_010--Hb_033843_020 Hb_035726_020 Hb_035726_020 Hb_035726_010--Hb_035726_020 Hb_035726_010--Hb_115414_010 Hb_001172_030 Hb_001172_030 Hb_035726_010--Hb_001172_030 Hb_022815_020 Hb_022815_020 Hb_035726_010--Hb_022815_020 Hb_001003_020 Hb_001003_020 Hb_035726_010--Hb_001003_020 Hb_000946_030 Hb_000946_030 Hb_010866_010--Hb_000946_030 Hb_010866_010--Hb_000363_020 Hb_010866_010--Hb_169514_010 Hb_115414_010--Hb_033843_020 Hb_115414_010--Hb_001172_030 Hb_115414_010--Hb_035726_020 Hb_115414_010--Hb_022815_020 Hb_115414_010--Hb_001003_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.213516 0 0.0230115 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.31104 1.11048

CAGE analysis