Hb_135684_010

Information

Type -
Description -
Location Contig135684: 16-612
Sequence    

Annotation

kegg
ID sly:104646271
description uncharacterized LOC104646271
nr
ID WP_016971917.1
description hypothetical protein [Pseudomonas tolaasii]
swissprot
ID -
description -
trembl
ID M1E0L9
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400047000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135684_010 0.0 - - hypothetical protein [Pseudomonas tolaasii]
2 Hb_015227_010 0.0558496631 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
3 Hb_000363_020 0.0998242555 - - metal ion binding protein, putative [Ricinus communis]
4 Hb_001959_280 0.111445273 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
5 Hb_010866_010 0.1139995545 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
6 Hb_137695_010 0.1280752923 - - PREDICTED: wall-associated receptor kinase 2-like [Malus domestica]
7 Hb_169514_010 0.1525205606 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
8 Hb_008489_010 0.1537381824 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
9 Hb_002837_140 0.159140311 - - hypothetical protein JCGZ_05022 [Jatropha curcas]
10 Hb_000666_020 0.167125226 - - Major latex protein, putative [Ricinus communis]
11 Hb_181968_010 0.1782066428 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
12 Hb_000946_030 0.1931759365 - - hypothetical protein JCGZ_10707 [Jatropha curcas]
13 Hb_002555_030 0.194139275 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Malus domestica]
14 Hb_020581_020 0.1961190165 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
15 Hb_000967_030 0.1973611016 - - -
16 Hb_000159_030 0.1988597429 - - putative glycosyltransferase, partial [Aralia elata]
17 Hb_159957_020 0.1990840723 - - -
18 Hb_019299_050 0.1995376367 - - -
19 Hb_055880_010 0.203526382 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_005625_050 0.2039108391 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]

Gene co-expression network

sample Hb_135684_010 Hb_135684_010 Hb_015227_010 Hb_015227_010 Hb_135684_010--Hb_015227_010 Hb_000363_020 Hb_000363_020 Hb_135684_010--Hb_000363_020 Hb_001959_280 Hb_001959_280 Hb_135684_010--Hb_001959_280 Hb_010866_010 Hb_010866_010 Hb_135684_010--Hb_010866_010 Hb_137695_010 Hb_137695_010 Hb_135684_010--Hb_137695_010 Hb_169514_010 Hb_169514_010 Hb_135684_010--Hb_169514_010 Hb_015227_010--Hb_001959_280 Hb_015227_010--Hb_137695_010 Hb_002837_140 Hb_002837_140 Hb_015227_010--Hb_002837_140 Hb_015227_010--Hb_010866_010 Hb_000666_020 Hb_000666_020 Hb_015227_010--Hb_000666_020 Hb_000363_020--Hb_169514_010 Hb_000363_020--Hb_010866_010 Hb_110782_010 Hb_110782_010 Hb_000363_020--Hb_110782_010 Hb_000363_020--Hb_015227_010 Hb_008489_010 Hb_008489_010 Hb_000363_020--Hb_008489_010 Hb_001959_280--Hb_002837_140 Hb_035726_010 Hb_035726_010 Hb_001959_280--Hb_035726_010 Hb_001959_280--Hb_010866_010 Hb_115414_010 Hb_115414_010 Hb_001959_280--Hb_115414_010 Hb_000946_030 Hb_000946_030 Hb_010866_010--Hb_000946_030 Hb_010866_010--Hb_169514_010 Hb_137695_010--Hb_000666_020 Hb_137695_010--Hb_002837_140 Hb_020581_020 Hb_020581_020 Hb_137695_010--Hb_020581_020 Hb_137695_010--Hb_001959_280 Hb_003376_280 Hb_003376_280 Hb_169514_010--Hb_003376_280 Hb_169514_010--Hb_110782_010 Hb_002570_050 Hb_002570_050 Hb_169514_010--Hb_002570_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.044841 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.393574 0.154601

CAGE analysis