Hb_008489_010

Information

Type -
Description -
Location Contig8489: 12788-17223
Sequence    

Annotation

kegg
ID rcu:RCOM_0024820
description multidrug resistance pump, putative
nr
ID XP_012085478.1
description PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID A0A067JRX8
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_17810 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008489_010 0.0 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
2 Hb_135684_010 0.1537381824 - - hypothetical protein [Pseudomonas tolaasii]
3 Hb_015227_010 0.1644345404 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
4 Hb_115414_010 0.164798851 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
5 Hb_010866_010 0.165094483 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
6 Hb_169514_010 0.1674518454 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
7 Hb_001172_030 0.1763199378 - - PREDICTED: protein NRT1/ PTR FAMILY 7.2-like isoform X1 [Jatropha curcas]
8 Hb_000363_020 0.1765320938 - - metal ion binding protein, putative [Ricinus communis]
9 Hb_001959_280 0.1777937823 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
10 Hb_033843_020 0.1788187802 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
11 Hb_005625_050 0.1839415528 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
12 Hb_019299_050 0.1839861075 - - -
13 Hb_007757_090 0.1845311345 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
14 Hb_006261_010 0.1852522664 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
15 Hb_018202_060 0.1852651829 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
16 Hb_035726_010 0.1885693003 - - Insulin-degrading enzyme, putative [Ricinus communis]
17 Hb_000967_030 0.19041259 - - -
18 Hb_000946_020 0.1927719971 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
19 Hb_000159_030 0.1957112624 - - putative glycosyltransferase, partial [Aralia elata]
20 Hb_159957_020 0.1962973243 - - -

Gene co-expression network

sample Hb_008489_010 Hb_008489_010 Hb_135684_010 Hb_135684_010 Hb_008489_010--Hb_135684_010 Hb_015227_010 Hb_015227_010 Hb_008489_010--Hb_015227_010 Hb_115414_010 Hb_115414_010 Hb_008489_010--Hb_115414_010 Hb_010866_010 Hb_010866_010 Hb_008489_010--Hb_010866_010 Hb_169514_010 Hb_169514_010 Hb_008489_010--Hb_169514_010 Hb_001172_030 Hb_001172_030 Hb_008489_010--Hb_001172_030 Hb_135684_010--Hb_015227_010 Hb_000363_020 Hb_000363_020 Hb_135684_010--Hb_000363_020 Hb_001959_280 Hb_001959_280 Hb_135684_010--Hb_001959_280 Hb_135684_010--Hb_010866_010 Hb_137695_010 Hb_137695_010 Hb_135684_010--Hb_137695_010 Hb_135684_010--Hb_169514_010 Hb_015227_010--Hb_001959_280 Hb_015227_010--Hb_137695_010 Hb_002837_140 Hb_002837_140 Hb_015227_010--Hb_002837_140 Hb_015227_010--Hb_010866_010 Hb_000666_020 Hb_000666_020 Hb_015227_010--Hb_000666_020 Hb_035726_010 Hb_035726_010 Hb_115414_010--Hb_035726_010 Hb_033843_020 Hb_033843_020 Hb_115414_010--Hb_033843_020 Hb_115414_010--Hb_001172_030 Hb_035726_020 Hb_035726_020 Hb_115414_010--Hb_035726_020 Hb_022815_020 Hb_022815_020 Hb_115414_010--Hb_022815_020 Hb_001003_020 Hb_001003_020 Hb_115414_010--Hb_001003_020 Hb_000946_030 Hb_000946_030 Hb_010866_010--Hb_000946_030 Hb_010866_010--Hb_000363_020 Hb_010866_010--Hb_001959_280 Hb_010866_010--Hb_169514_010 Hb_169514_010--Hb_000363_020 Hb_003376_280 Hb_003376_280 Hb_169514_010--Hb_003376_280 Hb_110782_010 Hb_110782_010 Hb_169514_010--Hb_110782_010 Hb_002570_050 Hb_002570_050 Hb_169514_010--Hb_002570_050 Hb_001172_030--Hb_022815_020 Hb_001172_030--Hb_033843_020 Hb_001172_030--Hb_035726_020 Hb_001172_030--Hb_001003_020 Hb_000659_010 Hb_000659_010 Hb_001172_030--Hb_000659_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.021938 0.0208025 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.40746 0.198977

CAGE analysis