Hb_110782_010

Information

Type -
Description -
Location Contig110782: 527-3412
Sequence    

Annotation

kegg
ID tcc:TCM_013681
description DNA/RNA polymerases superfamily protein
nr
ID XP_012482875.1
description PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID A0A087PV76
description TonB-dependent receptor OS=Acetobacter malorum GN=AmDm5_0694 PE=4 SV=1
Gene Ontology
ID GO:0046872
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_110782_010 0.0 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
2 Hb_020400_010 0.0562865611 - - PREDICTED: uncharacterized protein LOC105644073 [Jatropha curcas]
3 Hb_014967_010 0.105447461 - - -
4 Hb_159404_010 0.119440292 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
5 Hb_002733_050 0.1353580467 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_006013_030 0.1357707196 - - -
7 Hb_169514_010 0.1381753458 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
8 Hb_008755_020 0.1438674191 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000363_020 0.1469867261 - - metal ion binding protein, putative [Ricinus communis]
10 Hb_114121_010 0.1550779589 - - -
11 Hb_008144_010 0.1659606925 - - hypothetical protein VITISV_015004 [Vitis vinifera]
12 Hb_006274_020 0.1672575392 - - structural constituent of cell wall, putative [Ricinus communis]
13 Hb_000959_370 0.1725079671 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
14 Hb_000167_070 0.1730207795 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
15 Hb_072173_010 0.1809071477 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
16 Hb_056506_080 0.1819000262 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
17 Hb_003376_280 0.1861128806 - - ATP binding protein, putative [Ricinus communis]
18 Hb_003927_020 0.2007910699 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
19 Hb_131320_010 0.201553642 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
20 Hb_168909_010 0.2038038229 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]

Gene co-expression network

sample Hb_110782_010 Hb_110782_010 Hb_020400_010 Hb_020400_010 Hb_110782_010--Hb_020400_010 Hb_014967_010 Hb_014967_010 Hb_110782_010--Hb_014967_010 Hb_159404_010 Hb_159404_010 Hb_110782_010--Hb_159404_010 Hb_002733_050 Hb_002733_050 Hb_110782_010--Hb_002733_050 Hb_006013_030 Hb_006013_030 Hb_110782_010--Hb_006013_030 Hb_169514_010 Hb_169514_010 Hb_110782_010--Hb_169514_010 Hb_020400_010--Hb_014967_010 Hb_020400_010--Hb_159404_010 Hb_008755_020 Hb_008755_020 Hb_020400_010--Hb_008755_020 Hb_020400_010--Hb_002733_050 Hb_114121_010 Hb_114121_010 Hb_020400_010--Hb_114121_010 Hb_014967_010--Hb_159404_010 Hb_014967_010--Hb_008755_020 Hb_056506_080 Hb_056506_080 Hb_014967_010--Hb_056506_080 Hb_000167_070 Hb_000167_070 Hb_014967_010--Hb_000167_070 Hb_159404_010--Hb_008755_020 Hb_159404_010--Hb_056506_080 Hb_159404_010--Hb_000167_070 Hb_002733_050--Hb_114121_010 Hb_002733_050--Hb_006013_030 Hb_168909_010 Hb_168909_010 Hb_002733_050--Hb_168909_010 Hb_002733_050--Hb_008755_020 Hb_000280_120 Hb_000280_120 Hb_002733_050--Hb_000280_120 Hb_006013_030--Hb_114121_010 Hb_000959_370 Hb_000959_370 Hb_006013_030--Hb_000959_370 Hb_006013_030--Hb_000280_120 Hb_006013_030--Hb_168909_010 Hb_006013_030--Hb_020400_010 Hb_000363_020 Hb_000363_020 Hb_169514_010--Hb_000363_020 Hb_003376_280 Hb_003376_280 Hb_169514_010--Hb_003376_280 Hb_010866_010 Hb_010866_010 Hb_169514_010--Hb_010866_010 Hb_135684_010 Hb_135684_010 Hb_169514_010--Hb_135684_010 Hb_002570_050 Hb_002570_050 Hb_169514_010--Hb_002570_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00699204 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0240836 0.0321488

CAGE analysis