Hb_020400_010

Information

Type -
Description -
Location Contig20400: 2414-5079
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12050g
description POPTRDRAFT_668584; hypothetical protein
nr
ID XP_012084710.1
description PREDICTED: uncharacterized protein LOC105644073 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4I5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19854 PE=4 SV=1
Gene Ontology
ID GO:0005840
description PREDICTED: uncharacterized protein LOC105644073

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020400_010 0.0 - - PREDICTED: uncharacterized protein LOC105644073 [Jatropha curcas]
2 Hb_110782_010 0.0562865611 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
3 Hb_014967_010 0.060119832 - - -
4 Hb_159404_010 0.0757705385 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
5 Hb_008755_020 0.0891009964 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_002733_050 0.1070832768 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_114121_010 0.1165281618 - - -
8 Hb_056506_080 0.1262545544 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
9 Hb_006013_030 0.1287977238 - - -
10 Hb_000167_070 0.1520766908 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
11 Hb_006274_020 0.1532934435 - - structural constituent of cell wall, putative [Ricinus communis]
12 Hb_072173_010 0.1595188472 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
13 Hb_179183_010 0.1659920089 - - RALF-LIKE 32 family protein [Populus trichocarpa]
14 Hb_006120_160 0.1663530308 - - -
15 Hb_168909_010 0.1693724253 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
16 Hb_101034_010 0.1707807641 - - -
17 Hb_005432_020 0.1746565945 - - -
18 Hb_003927_020 0.1748558895 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]
19 Hb_181013_010 0.178859813 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
20 Hb_000959_370 0.1807177329 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_020400_010 Hb_020400_010 Hb_110782_010 Hb_110782_010 Hb_020400_010--Hb_110782_010 Hb_014967_010 Hb_014967_010 Hb_020400_010--Hb_014967_010 Hb_159404_010 Hb_159404_010 Hb_020400_010--Hb_159404_010 Hb_008755_020 Hb_008755_020 Hb_020400_010--Hb_008755_020 Hb_002733_050 Hb_002733_050 Hb_020400_010--Hb_002733_050 Hb_114121_010 Hb_114121_010 Hb_020400_010--Hb_114121_010 Hb_110782_010--Hb_014967_010 Hb_110782_010--Hb_159404_010 Hb_110782_010--Hb_002733_050 Hb_006013_030 Hb_006013_030 Hb_110782_010--Hb_006013_030 Hb_169514_010 Hb_169514_010 Hb_110782_010--Hb_169514_010 Hb_014967_010--Hb_159404_010 Hb_014967_010--Hb_008755_020 Hb_056506_080 Hb_056506_080 Hb_014967_010--Hb_056506_080 Hb_000167_070 Hb_000167_070 Hb_014967_010--Hb_000167_070 Hb_159404_010--Hb_008755_020 Hb_159404_010--Hb_056506_080 Hb_159404_010--Hb_000167_070 Hb_008755_020--Hb_056506_080 Hb_008755_020--Hb_114121_010 Hb_006120_160 Hb_006120_160 Hb_008755_020--Hb_006120_160 Hb_179183_010 Hb_179183_010 Hb_008755_020--Hb_179183_010 Hb_101034_010 Hb_101034_010 Hb_008755_020--Hb_101034_010 Hb_002733_050--Hb_114121_010 Hb_002733_050--Hb_006013_030 Hb_168909_010 Hb_168909_010 Hb_002733_050--Hb_168909_010 Hb_002733_050--Hb_008755_020 Hb_000280_120 Hb_000280_120 Hb_002733_050--Hb_000280_120 Hb_114121_010--Hb_168909_010 Hb_114121_010--Hb_179183_010 Hb_114121_010--Hb_006013_030 Hb_114121_010--Hb_000280_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0095367 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0246869 0.043463

CAGE analysis