Hb_000363_020

Information

Type -
Description -
Location Contig363: 6217-6827
Sequence    

Annotation

kegg
ID rcu:RCOM_0423950
description metal ion binding protein, putative
nr
ID XP_002533038.1
description metal ion binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T469
description Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_0423950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_020 0.0 - - metal ion binding protein, putative [Ricinus communis]
2 Hb_169514_010 0.0963430191 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
3 Hb_135684_010 0.0998242555 - - hypothetical protein [Pseudomonas tolaasii]
4 Hb_010866_010 0.1302397629 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
5 Hb_110782_010 0.1469867261 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
6 Hb_015227_010 0.1551821389 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
7 Hb_008489_010 0.1765320938 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
8 Hb_002555_030 0.1859599255 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Malus domestica]
9 Hb_008144_010 0.1952601523 - - hypothetical protein VITISV_015004 [Vitis vinifera]
10 Hb_020400_010 0.2016447874 - - PREDICTED: uncharacterized protein LOC105644073 [Jatropha curcas]
11 Hb_001959_280 0.2024932115 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
12 Hb_137695_010 0.2025422998 - - PREDICTED: wall-associated receptor kinase 2-like [Malus domestica]
13 Hb_000959_370 0.2034440117 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
14 Hb_019641_020 0.2087399392 - - hypothetical protein AALP_AAs49670U000100, partial [Arabis alpina]
15 Hb_000946_030 0.2096256788 - - hypothetical protein JCGZ_10707 [Jatropha curcas]
16 Hb_006013_030 0.2098525268 - - -
17 Hb_044313_010 0.2134108115 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006120_020 0.2140978113 - - -
19 Hb_006651_010 0.2142106184 - - PREDICTED: protein disulfide isomerase-like 1-4-like [Citrus sinensis]
20 Hb_181968_010 0.2166392011 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]

Gene co-expression network

sample Hb_000363_020 Hb_000363_020 Hb_169514_010 Hb_169514_010 Hb_000363_020--Hb_169514_010 Hb_135684_010 Hb_135684_010 Hb_000363_020--Hb_135684_010 Hb_010866_010 Hb_010866_010 Hb_000363_020--Hb_010866_010 Hb_110782_010 Hb_110782_010 Hb_000363_020--Hb_110782_010 Hb_015227_010 Hb_015227_010 Hb_000363_020--Hb_015227_010 Hb_008489_010 Hb_008489_010 Hb_000363_020--Hb_008489_010 Hb_003376_280 Hb_003376_280 Hb_169514_010--Hb_003376_280 Hb_169514_010--Hb_110782_010 Hb_169514_010--Hb_010866_010 Hb_169514_010--Hb_135684_010 Hb_002570_050 Hb_002570_050 Hb_169514_010--Hb_002570_050 Hb_135684_010--Hb_015227_010 Hb_001959_280 Hb_001959_280 Hb_135684_010--Hb_001959_280 Hb_135684_010--Hb_010866_010 Hb_137695_010 Hb_137695_010 Hb_135684_010--Hb_137695_010 Hb_000946_030 Hb_000946_030 Hb_010866_010--Hb_000946_030 Hb_010866_010--Hb_015227_010 Hb_010866_010--Hb_001959_280 Hb_020400_010 Hb_020400_010 Hb_110782_010--Hb_020400_010 Hb_014967_010 Hb_014967_010 Hb_110782_010--Hb_014967_010 Hb_159404_010 Hb_159404_010 Hb_110782_010--Hb_159404_010 Hb_002733_050 Hb_002733_050 Hb_110782_010--Hb_002733_050 Hb_006013_030 Hb_006013_030 Hb_110782_010--Hb_006013_030 Hb_015227_010--Hb_001959_280 Hb_015227_010--Hb_137695_010 Hb_002837_140 Hb_002837_140 Hb_015227_010--Hb_002837_140 Hb_000666_020 Hb_000666_020 Hb_015227_010--Hb_000666_020 Hb_008489_010--Hb_135684_010 Hb_008489_010--Hb_015227_010 Hb_115414_010 Hb_115414_010 Hb_008489_010--Hb_115414_010 Hb_008489_010--Hb_010866_010 Hb_008489_010--Hb_169514_010 Hb_001172_030 Hb_001172_030 Hb_008489_010--Hb_001172_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0921835 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.510174 0.326837

CAGE analysis