Hb_020581_020

Information

Type -
Description -
Location Contig20581: 50919-53864
Sequence    

Annotation

kegg
ID ppp:PHYPADRAFT_14825
description hypothetical protein
nr
ID KJB18674.1
description hypothetical protein B456_003G065300 [Gossypium raimondii]
swissprot
ID Q9LJF3
description Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1
trembl
ID A0A0D2RHS9
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G065300 PE=4 SV=1
Gene Ontology
ID GO:0005622
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21216: 51942-95174
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020581_020 0.0 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
2 Hb_181968_010 0.1137867318 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
3 Hb_000130_210 0.1261682076 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
4 Hb_002837_140 0.1329678771 - - hypothetical protein JCGZ_05022 [Jatropha curcas]
5 Hb_000666_020 0.1393269937 - - Major latex protein, putative [Ricinus communis]
6 Hb_108884_020 0.1418467808 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
7 Hb_137695_010 0.1448531538 - - PREDICTED: wall-associated receptor kinase 2-like [Malus domestica]
8 Hb_000046_060 0.1470188872 - - sugar transporter, putative [Ricinus communis]
9 Hb_004190_010 0.1596439134 - - unnamed protein product [Vitis vinifera]
10 Hb_003900_050 0.1626633503 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
11 Hb_002555_030 0.162998666 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Malus domestica]
12 Hb_009012_020 0.1682519743 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
13 Hb_110218_010 0.1683672649 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
14 Hb_000422_020 0.1722934341 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
15 Hb_011282_070 0.1741716489 - - ATP binding protein, putative [Ricinus communis]
16 Hb_001675_230 0.1757833429 - - scab resistance family protein [Populus trichocarpa]
17 Hb_006651_010 0.1833679104 - - PREDICTED: protein disulfide isomerase-like 1-4-like [Citrus sinensis]
18 Hb_020581_050 0.1860423334 - - -
19 Hb_018591_050 0.1862676981 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
20 Hb_004463_040 0.1874666781 - - -

Gene co-expression network

sample Hb_020581_020 Hb_020581_020 Hb_181968_010 Hb_181968_010 Hb_020581_020--Hb_181968_010 Hb_000130_210 Hb_000130_210 Hb_020581_020--Hb_000130_210 Hb_002837_140 Hb_002837_140 Hb_020581_020--Hb_002837_140 Hb_000666_020 Hb_000666_020 Hb_020581_020--Hb_000666_020 Hb_108884_020 Hb_108884_020 Hb_020581_020--Hb_108884_020 Hb_137695_010 Hb_137695_010 Hb_020581_020--Hb_137695_010 Hb_181968_010--Hb_137695_010 Hb_181968_010--Hb_002837_140 Hb_181968_010--Hb_000666_020 Hb_181968_010--Hb_000130_210 Hb_135684_010 Hb_135684_010 Hb_181968_010--Hb_135684_010 Hb_000046_060 Hb_000046_060 Hb_000130_210--Hb_000046_060 Hb_000130_210--Hb_108884_020 Hb_004190_010 Hb_004190_010 Hb_000130_210--Hb_004190_010 Hb_000130_210--Hb_000666_020 Hb_000130_210--Hb_002837_140 Hb_002837_140--Hb_000666_020 Hb_002837_140--Hb_137695_010 Hb_001959_280 Hb_001959_280 Hb_002837_140--Hb_001959_280 Hb_015227_010 Hb_015227_010 Hb_002837_140--Hb_015227_010 Hb_002837_140--Hb_004190_010 Hb_000666_020--Hb_137695_010 Hb_115007_010 Hb_115007_010 Hb_000666_020--Hb_115007_010 Hb_000666_020--Hb_000046_060 Hb_000666_020--Hb_015227_010 Hb_011282_070 Hb_011282_070 Hb_000666_020--Hb_011282_070 Hb_000608_450 Hb_000608_450 Hb_108884_020--Hb_000608_450 Hb_108884_020--Hb_000046_060 Hb_009012_020 Hb_009012_020 Hb_108884_020--Hb_009012_020 Hb_000286_190 Hb_000286_190 Hb_108884_020--Hb_000286_190 Hb_108884_020--Hb_004190_010 Hb_000684_020 Hb_000684_020 Hb_108884_020--Hb_000684_020 Hb_137695_010--Hb_015227_010 Hb_137695_010--Hb_135684_010 Hb_137695_010--Hb_001959_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0778467 2.03097 0.0233297 0.30778 0 0.164314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.81254 2.12822

CAGE analysis