Hb_011282_070

Information

Type -
Description -
Location Contig11282: 98128-100416
Sequence    

Annotation

kegg
ID rcu:RCOM_1447940
description ATP binding protein, putative
nr
ID XP_002512936.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q54DY9
description Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1
trembl
ID B9RH77
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1447940 PE=3 SV=1
Gene Ontology
ID GO:0005524
description probable mitochondrial chaperone bcs1-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03882: 98412-99457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011282_070 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_021419_060 0.0586095267 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
3 Hb_004463_040 0.1104397685 - - -
4 Hb_002048_010 0.1117041008 - - unknown [Lotus japonicus]
5 Hb_020332_040 0.1175080126 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
6 Hb_000422_020 0.1178957054 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
7 Hb_000683_010 0.1215514358 - - Interleukin-1 receptor-associated kinase, putative [Ricinus communis]
8 Hb_000189_260 0.130009784 - - conserved hypothetical protein [Ricinus communis]
9 Hb_175968_010 0.1343238923 - - hypothetical protein JCGZ_21281 [Jatropha curcas]
10 Hb_002837_140 0.1356423646 - - hypothetical protein JCGZ_05022 [Jatropha curcas]
11 Hb_002917_010 0.1358817567 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
12 Hb_009012_020 0.1371128959 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
13 Hb_000666_020 0.1384105551 - - Major latex protein, putative [Ricinus communis]
14 Hb_004190_010 0.1386986095 - - unnamed protein product [Vitis vinifera]
15 Hb_012660_010 0.1413098531 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
16 Hb_003900_050 0.1424945957 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
17 Hb_004222_010 0.142823146 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
18 Hb_001288_010 0.1438158337 - - -
19 Hb_000976_020 0.1442504858 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
20 Hb_004448_030 0.1455116806 - - PREDICTED: RING-H2 finger protein ATL40-like [Jatropha curcas]

Gene co-expression network

sample Hb_011282_070 Hb_011282_070 Hb_021419_060 Hb_021419_060 Hb_011282_070--Hb_021419_060 Hb_004463_040 Hb_004463_040 Hb_011282_070--Hb_004463_040 Hb_002048_010 Hb_002048_010 Hb_011282_070--Hb_002048_010 Hb_020332_040 Hb_020332_040 Hb_011282_070--Hb_020332_040 Hb_000422_020 Hb_000422_020 Hb_011282_070--Hb_000422_020 Hb_000683_010 Hb_000683_010 Hb_011282_070--Hb_000683_010 Hb_002917_010 Hb_002917_010 Hb_021419_060--Hb_002917_010 Hb_021419_060--Hb_004463_040 Hb_021419_060--Hb_002048_010 Hb_021419_060--Hb_020332_040 Hb_064398_010 Hb_064398_010 Hb_021419_060--Hb_064398_010 Hb_003900_050 Hb_003900_050 Hb_004463_040--Hb_003900_050 Hb_004200_040 Hb_004200_040 Hb_004463_040--Hb_004200_040 Hb_000976_020 Hb_000976_020 Hb_004463_040--Hb_000976_020 Hb_009012_020 Hb_009012_020 Hb_004463_040--Hb_009012_020 Hb_004463_040--Hb_020332_040 Hb_004463_040--Hb_002048_010 Hb_002048_010--Hb_020332_040 Hb_012796_050 Hb_012796_050 Hb_002048_010--Hb_012796_050 Hb_002965_020 Hb_002965_020 Hb_002048_010--Hb_002965_020 Hb_002048_010--Hb_000976_020 Hb_000189_260 Hb_000189_260 Hb_002048_010--Hb_000189_260 Hb_012660_010 Hb_012660_010 Hb_020332_040--Hb_012660_010 Hb_020332_040--Hb_000189_260 Hb_011486_030 Hb_011486_030 Hb_020332_040--Hb_011486_030 Hb_027141_010 Hb_027141_010 Hb_020332_040--Hb_027141_010 Hb_020332_040--Hb_000976_020 Hb_000575_110 Hb_000575_110 Hb_000422_020--Hb_000575_110 Hb_000422_020--Hb_000683_010 Hb_008768_010 Hb_008768_010 Hb_000422_020--Hb_008768_010 Hb_000422_020--Hb_003900_050 Hb_056101_010 Hb_056101_010 Hb_000422_020--Hb_056101_010 Hb_025526_010 Hb_025526_010 Hb_000422_020--Hb_025526_010 Hb_000683_010--Hb_008768_010 Hb_000683_010--Hb_020332_040 Hb_000683_010--Hb_027141_010 Hb_000683_010--Hb_003900_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.112973 7.74476 2.09127 1.55816 0.0478379 0.048256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0423587 71.9692 6.93531

CAGE analysis