Hb_004190_010

Information

Type -
Description -
Location Contig4190: 10024-16245
Sequence    

Annotation

kegg
ID vvi:100259603
description tropinone reductase-like 1
nr
ID CBI28275.3
description unnamed protein product [Vitis vinifera]
swissprot
ID H9BFQ0
description Tropinone reductase-like 1 OS=Erythroxylum coca PE=2 SV=1
trembl
ID A0A067KWG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08813 PE=3 SV=1
Gene Ontology
ID GO:0016491
description tropinone reductase-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004190_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000907_190 0.1093920445 - - PREDICTED: uncharacterized protein At4g15970-like [Jatropha curcas]
3 Hb_004200_040 0.1130468307 - - laccase, putative [Ricinus communis]
4 Hb_000140_260 0.1159891622 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
5 Hb_003900_050 0.1166464998 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
6 Hb_012660_010 0.1177245237 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
7 Hb_004463_040 0.1184910901 - - -
8 Hb_000046_060 0.1197421455 - - sugar transporter, putative [Ricinus communis]
9 Hb_020332_040 0.1221805306 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
10 Hb_002837_140 0.1280074264 - - hypothetical protein JCGZ_05022 [Jatropha curcas]
11 Hb_000205_210 0.1297022095 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
12 Hb_009012_020 0.130106096 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
13 Hb_027141_010 0.1316495871 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_108884_020 0.1347506807 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
15 Hb_001442_080 0.1383673468 transcription factor TF Family: MYB-related transcription factor MYB251 [Fagus crenata]
16 Hb_011282_070 0.1386986095 - - ATP binding protein, putative [Ricinus communis]
17 Hb_107258_010 0.1398291678 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
18 Hb_064398_010 0.1401867766 - - cytochrome P450, putative [Ricinus communis]
19 Hb_000189_260 0.1418247003 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000130_210 0.1428697673 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]

Gene co-expression network

sample Hb_004190_010 Hb_004190_010 Hb_000907_190 Hb_000907_190 Hb_004190_010--Hb_000907_190 Hb_004200_040 Hb_004200_040 Hb_004190_010--Hb_004200_040 Hb_000140_260 Hb_000140_260 Hb_004190_010--Hb_000140_260 Hb_003900_050 Hb_003900_050 Hb_004190_010--Hb_003900_050 Hb_012660_010 Hb_012660_010 Hb_004190_010--Hb_012660_010 Hb_004463_040 Hb_004463_040 Hb_004190_010--Hb_004463_040 Hb_003968_020 Hb_003968_020 Hb_000907_190--Hb_003968_020 Hb_023080_010 Hb_023080_010 Hb_000907_190--Hb_023080_010 Hb_006620_040 Hb_006620_040 Hb_000907_190--Hb_006620_040 Hb_000076_200 Hb_000076_200 Hb_000907_190--Hb_000076_200 Hb_000907_190--Hb_012660_010 Hb_004200_040--Hb_000140_260 Hb_000205_210 Hb_000205_210 Hb_004200_040--Hb_000205_210 Hb_004200_040--Hb_003900_050 Hb_004200_040--Hb_004463_040 Hb_027141_010 Hb_027141_010 Hb_004200_040--Hb_027141_010 Hb_000684_020 Hb_000684_020 Hb_004200_040--Hb_000684_020 Hb_000140_260--Hb_000205_210 Hb_000140_260--Hb_027141_010 Hb_076895_020 Hb_076895_020 Hb_000140_260--Hb_076895_020 Hb_000539_080 Hb_000539_080 Hb_000140_260--Hb_000539_080 Hb_000984_080 Hb_000984_080 Hb_000140_260--Hb_000984_080 Hb_003900_050--Hb_004463_040 Hb_003900_050--Hb_000205_210 Hb_003900_050--Hb_000140_260 Hb_004881_060 Hb_004881_060 Hb_003900_050--Hb_004881_060 Hb_003900_050--Hb_000684_020 Hb_020332_040 Hb_020332_040 Hb_012660_010--Hb_020332_040 Hb_107258_010 Hb_107258_010 Hb_012660_010--Hb_107258_010 Hb_011486_030 Hb_011486_030 Hb_012660_010--Hb_011486_030 Hb_001288_010 Hb_001288_010 Hb_012660_010--Hb_001288_010 Hb_001863_290 Hb_001863_290 Hb_012660_010--Hb_001863_290 Hb_000301_030 Hb_000301_030 Hb_012660_010--Hb_000301_030 Hb_000976_020 Hb_000976_020 Hb_004463_040--Hb_000976_020 Hb_009012_020 Hb_009012_020 Hb_004463_040--Hb_009012_020 Hb_004463_040--Hb_020332_040 Hb_002048_010 Hb_002048_010 Hb_004463_040--Hb_002048_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0837352 0 0.0290516 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.536944 0.0463611

CAGE analysis