Hb_001211_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig1211: 54066-55557
Sequence    

Annotation

kegg
ID pop:POPTR_0002s11440g
description POPTRDRAFT_408761; hypothetical protein
nr
ID XP_002301137.2
description hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
swissprot
ID Q9M2Y9
description Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1
trembl
ID B9GNK5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s11440g PE=4 SV=2
Gene Ontology
ID GO:0003677
description transcription factor rax3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001211_020 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
2 Hb_001856_090 0.1642750207 - - Cellulose synthase-like B3, putative isoform 2 [Theobroma cacao]
3 Hb_001269_020 0.1760213654 - - PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]
4 Hb_004918_040 0.1771017172 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003735_010 0.1771465168 - - -
6 Hb_008397_020 0.1771502843 - - polyprotein [Oryza australiensis]
7 Hb_001719_030 0.1771713045 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_083377_010 0.1771930952 - - unnamed protein product [Vitis vinifera]
9 Hb_005656_090 0.1774370916 transcription factor TF Family: NAC hypothetical protein CICLE_v10008885mg [Citrus clementina]
10 Hb_010139_010 0.1775010576 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]
11 Hb_002621_020 0.1781066689 - - -
12 Hb_000703_310 0.1784953914 - - -
13 Hb_007441_030 0.1788648568 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
14 Hb_007658_020 0.1796230203 - - Beta-amyrin synthase [Glycine soja]
15 Hb_000163_310 0.179661417 - - PREDICTED: ABC transporter C family member 4-like [Malus domestica]
16 Hb_000000_220 0.1796774312 - - protein with unknown function [Ricinus communis]
17 Hb_007382_060 0.1803079399 - - -
18 Hb_004195_050 0.1803153483 - - -
19 Hb_001073_020 0.1808428585 - - hypothetical protein CISIN_1g031854mg [Citrus sinensis]
20 Hb_006364_010 0.1814232129 - - -

Gene co-expression network

sample Hb_001211_020 Hb_001211_020 Hb_001856_090 Hb_001856_090 Hb_001211_020--Hb_001856_090 Hb_001269_020 Hb_001269_020 Hb_001211_020--Hb_001269_020 Hb_004918_040 Hb_004918_040 Hb_001211_020--Hb_004918_040 Hb_003735_010 Hb_003735_010 Hb_001211_020--Hb_003735_010 Hb_008397_020 Hb_008397_020 Hb_001211_020--Hb_008397_020 Hb_001719_030 Hb_001719_030 Hb_001211_020--Hb_001719_030 Hb_001832_020 Hb_001832_020 Hb_001856_090--Hb_001832_020 Hb_032631_010 Hb_032631_010 Hb_001856_090--Hb_032631_010 Hb_001085_100 Hb_001085_100 Hb_001856_090--Hb_001085_100 Hb_000597_110 Hb_000597_110 Hb_001856_090--Hb_000597_110 Hb_000220_160 Hb_000220_160 Hb_001856_090--Hb_000220_160 Hb_181092_010 Hb_181092_010 Hb_001269_020--Hb_181092_010 Hb_002677_010 Hb_002677_010 Hb_001269_020--Hb_002677_010 Hb_000185_060 Hb_000185_060 Hb_001269_020--Hb_000185_060 Hb_156949_010 Hb_156949_010 Hb_001269_020--Hb_156949_010 Hb_032582_010 Hb_032582_010 Hb_001269_020--Hb_032582_010 Hb_000856_350 Hb_000856_350 Hb_001269_020--Hb_000856_350 Hb_004918_040--Hb_003735_010 Hb_004918_040--Hb_008397_020 Hb_004918_040--Hb_001719_030 Hb_083377_010 Hb_083377_010 Hb_004918_040--Hb_083377_010 Hb_005656_090 Hb_005656_090 Hb_004918_040--Hb_005656_090 Hb_010139_010 Hb_010139_010 Hb_004918_040--Hb_010139_010 Hb_003735_010--Hb_008397_020 Hb_003735_010--Hb_001719_030 Hb_003735_010--Hb_083377_010 Hb_003735_010--Hb_005656_090 Hb_003735_010--Hb_010139_010 Hb_008397_020--Hb_001719_030 Hb_008397_020--Hb_083377_010 Hb_008397_020--Hb_005656_090 Hb_008397_020--Hb_010139_010 Hb_001719_030--Hb_083377_010 Hb_001719_030--Hb_005656_090 Hb_001719_030--Hb_010139_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0176758 0.273385 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0317551 0 0.483352 0

CAGE analysis