Hb_001832_020

Information

Type -
Description -
Location Contig1832: 16733-17847
Sequence    

Annotation

kegg
ID bdi:104584029
description uncharacterized LOC104584029
nr
ID XP_010236427.1
description PREDICTED: uncharacterized protein LOC104584029 [Brachypodium distachyon]
swissprot
ID -
description -
trembl
ID A0A068V1I5
description Coffea canephora DH200=94 genomic scaffold, scaffold_82 OS=Coffea canephora GN=GSCOC_T00040726001 PE=4 SV=1
Gene Ontology
ID GO:0003676
description rnase h domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001832_020 0.0 - - PREDICTED: uncharacterized protein LOC104584029 [Brachypodium distachyon]
2 Hb_001085_100 0.1113440479 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_008479_020 0.137415687 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
4 Hb_001856_090 0.1383975335 - - Cellulose synthase-like B3, putative isoform 2 [Theobroma cacao]
5 Hb_027472_230 0.223607335 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
6 Hb_032631_010 0.2245787388 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
7 Hb_001045_050 0.2595021291 transcription factor TF Family: WRKY hypothetical protein POPTR_0001s33560g [Populus trichocarpa]
8 Hb_003435_060 0.2596496248 - - carbonic anhydrase, putative [Ricinus communis]
9 Hb_000220_160 0.2598717531 - - hypothetical protein B456_003G184800 [Gossypium raimondii]
10 Hb_000597_110 0.2718010651 - - PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas]
11 Hb_001211_020 0.2747459436 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
12 Hb_008289_050 0.2835948881 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
13 Hb_004195_180 0.2878289951 - - unnamed protein product [Coffea canephora]
14 Hb_005288_040 0.2908478534 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
15 Hb_007101_290 0.2949499553 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
16 Hb_000140_160 0.2961642344 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
17 Hb_001703_110 0.2994033191 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
18 Hb_132880_030 0.3038129911 - - hypothetical protein JCGZ_10325 [Jatropha curcas]
19 Hb_009813_080 0.304192637 - - hypothetical protein CISIN_1g045991mg [Citrus sinensis]
20 Hb_002311_170 0.3104584543 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_001832_020 Hb_001832_020 Hb_001085_100 Hb_001085_100 Hb_001832_020--Hb_001085_100 Hb_008479_020 Hb_008479_020 Hb_001832_020--Hb_008479_020 Hb_001856_090 Hb_001856_090 Hb_001832_020--Hb_001856_090 Hb_027472_230 Hb_027472_230 Hb_001832_020--Hb_027472_230 Hb_032631_010 Hb_032631_010 Hb_001832_020--Hb_032631_010 Hb_001045_050 Hb_001045_050 Hb_001832_020--Hb_001045_050 Hb_001085_100--Hb_008479_020 Hb_001085_100--Hb_001856_090 Hb_009813_080 Hb_009813_080 Hb_001085_100--Hb_009813_080 Hb_002311_170 Hb_002311_170 Hb_001085_100--Hb_002311_170 Hb_001085_100--Hb_027472_230 Hb_008479_020--Hb_009813_080 Hb_008479_020--Hb_002311_170 Hb_003052_230 Hb_003052_230 Hb_008479_020--Hb_003052_230 Hb_008479_020--Hb_027472_230 Hb_001856_090--Hb_032631_010 Hb_001211_020 Hb_001211_020 Hb_001856_090--Hb_001211_020 Hb_000597_110 Hb_000597_110 Hb_001856_090--Hb_000597_110 Hb_000220_160 Hb_000220_160 Hb_001856_090--Hb_000220_160 Hb_004195_180 Hb_004195_180 Hb_027472_230--Hb_004195_180 Hb_008289_050 Hb_008289_050 Hb_027472_230--Hb_008289_050 Hb_001720_060 Hb_001720_060 Hb_027472_230--Hb_001720_060 Hb_000390_260 Hb_000390_260 Hb_027472_230--Hb_000390_260 Hb_032631_010--Hb_000597_110 Hb_032631_010--Hb_000220_160 Hb_132880_030 Hb_132880_030 Hb_032631_010--Hb_132880_030 Hb_001951_090 Hb_001951_090 Hb_032631_010--Hb_001951_090 Hb_006452_050 Hb_006452_050 Hb_032631_010--Hb_006452_050 Hb_000140_160 Hb_000140_160 Hb_001045_050--Hb_000140_160 Hb_001101_030 Hb_001101_030 Hb_001045_050--Hb_001101_030 Hb_002006_140 Hb_002006_140 Hb_001045_050--Hb_002006_140 Hb_003435_060 Hb_003435_060 Hb_001045_050--Hb_003435_060 Hb_000500_110 Hb_000500_110 Hb_001045_050--Hb_000500_110 Hb_001045_050--Hb_000597_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0591333 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0637292 0 0.155588 0

CAGE analysis