Hb_000500_110

Information

Type -
Description -
Location Contig500: 74908-75780
Sequence    

Annotation

kegg
ID rcu:RCOM_1502420
description Blue copper protein precursor, putative
nr
ID XP_002511023.1
description Blue copper protein precursor, putative [Ricinus communis]
swissprot
ID Q9SK27
description Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2
trembl
ID B9R9Z8
description Blue copper protein, putative OS=Ricinus communis GN=RCOM_1502420 PE=4 SV=1
Gene Ontology
ID GO:0009055
description blue copper protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_110 0.0 - - Blue copper protein precursor, putative [Ricinus communis]
2 Hb_003057_080 0.1550616827 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Jatropha curcas]
3 Hb_030291_030 0.1554168543 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
4 Hb_000926_130 0.1668805769 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_000045_230 0.1812369416 - - PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
6 Hb_000140_160 0.1864083577 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
7 Hb_007072_020 0.1870708047 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
8 Hb_000213_130 0.1933318401 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
9 Hb_020025_020 0.1935254919 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
10 Hb_002311_240 0.1968364937 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
11 Hb_002161_020 0.1974957304 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
12 Hb_022250_050 0.1995561829 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000007_110 0.1997881586 - - PREDICTED: peroxidase 11 [Jatropha curcas]
14 Hb_007520_040 0.1998493764 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
15 Hb_003891_060 0.2027907703 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
16 Hb_003096_050 0.2035643743 - - conserved hypothetical protein [Ricinus communis]
17 Hb_159769_010 0.2042993571 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
18 Hb_003538_020 0.2046802136 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
19 Hb_001699_240 0.2051745733 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
20 Hb_002553_170 0.206223589 - - PREDICTED: early nodulin-75-like [Jatropha curcas]

Gene co-expression network

sample Hb_000500_110 Hb_000500_110 Hb_003057_080 Hb_003057_080 Hb_000500_110--Hb_003057_080 Hb_030291_030 Hb_030291_030 Hb_000500_110--Hb_030291_030 Hb_000926_130 Hb_000926_130 Hb_000500_110--Hb_000926_130 Hb_000045_230 Hb_000045_230 Hb_000500_110--Hb_000045_230 Hb_000140_160 Hb_000140_160 Hb_000500_110--Hb_000140_160 Hb_007072_020 Hb_007072_020 Hb_000500_110--Hb_007072_020 Hb_003057_080--Hb_000045_230 Hb_002311_240 Hb_002311_240 Hb_003057_080--Hb_002311_240 Hb_000019_220 Hb_000019_220 Hb_003057_080--Hb_000019_220 Hb_000347_550 Hb_000347_550 Hb_003057_080--Hb_000347_550 Hb_080225_010 Hb_080225_010 Hb_003057_080--Hb_080225_010 Hb_011283_010 Hb_011283_010 Hb_003057_080--Hb_011283_010 Hb_020025_020 Hb_020025_020 Hb_030291_030--Hb_020025_020 Hb_159769_010 Hb_159769_010 Hb_030291_030--Hb_159769_010 Hb_022250_050 Hb_022250_050 Hb_030291_030--Hb_022250_050 Hb_000007_110 Hb_000007_110 Hb_030291_030--Hb_000007_110 Hb_003446_030 Hb_003446_030 Hb_030291_030--Hb_003446_030 Hb_000056_330 Hb_000056_330 Hb_000926_130--Hb_000056_330 Hb_007894_250 Hb_007894_250 Hb_000926_130--Hb_007894_250 Hb_000926_130--Hb_007072_020 Hb_003096_050 Hb_003096_050 Hb_000926_130--Hb_003096_050 Hb_001190_060 Hb_001190_060 Hb_000926_130--Hb_001190_060 Hb_000045_230--Hb_000019_220 Hb_004037_010 Hb_004037_010 Hb_000045_230--Hb_004037_010 Hb_000045_230--Hb_011283_010 Hb_001699_240 Hb_001699_240 Hb_000045_230--Hb_001699_240 Hb_001165_040 Hb_001165_040 Hb_000045_230--Hb_001165_040 Hb_001045_050 Hb_001045_050 Hb_000140_160--Hb_001045_050 Hb_027445_090 Hb_027445_090 Hb_000140_160--Hb_027445_090 Hb_000256_100 Hb_000256_100 Hb_000140_160--Hb_000256_100 Hb_000140_160--Hb_001190_060 Hb_000140_160--Hb_000007_110 Hb_007072_020--Hb_000056_330 Hb_007520_040 Hb_007520_040 Hb_007072_020--Hb_007520_040 Hb_007072_020--Hb_007894_250 Hb_006355_030 Hb_006355_030 Hb_007072_020--Hb_006355_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0885611 0.0233297 0.0557132 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.168106 0.10097 2.58942 0

CAGE analysis