Hb_000056_330

Information

Type -
Description -
Location Contig56: 454345-455441
Sequence    

Annotation

kegg
ID vvi:100260235
description glutathione S-transferase U10-like
nr
ID CBI31960.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9CA57
description Glutathione S-transferase U10 OS=Arabidopsis thaliana GN=GSTU10 PE=2 SV=1
trembl
ID F6HPC0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02400 PE=3 SV=1
Gene Ontology
ID GO:0016740
description glutathione s-transferase u10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48745: 454783-455403
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_330 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000926_130 0.1137719714 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_007894_250 0.1204305714 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
4 Hb_003096_050 0.1496095784 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001190_060 0.1804788733 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
6 Hb_007072_020 0.1889829867 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
7 Hb_000975_150 0.2116098461 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
8 Hb_004800_170 0.2151056379 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
9 Hb_000500_110 0.2153522463 - - Blue copper protein precursor, putative [Ricinus communis]
10 Hb_000140_160 0.2158957948 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
11 Hb_002918_230 0.2167891894 - - PREDICTED: probable glutathione S-transferase [Gossypium raimondii]
12 Hb_000816_120 0.2171208659 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
13 Hb_000455_100 0.2369673535 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
14 Hb_000007_110 0.2627555801 - - PREDICTED: peroxidase 11 [Jatropha curcas]
15 Hb_024621_030 0.2630476564 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
16 Hb_001045_050 0.2632859404 transcription factor TF Family: WRKY hypothetical protein POPTR_0001s33560g [Populus trichocarpa]
17 Hb_000213_130 0.264576797 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
18 Hb_002311_240 0.2650549956 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
19 Hb_010647_010 0.2730186003 - - PREDICTED: protein NP24-like [Eucalyptus grandis]
20 Hb_030291_030 0.2750886433 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000056_330 Hb_000056_330 Hb_000926_130 Hb_000926_130 Hb_000056_330--Hb_000926_130 Hb_007894_250 Hb_007894_250 Hb_000056_330--Hb_007894_250 Hb_003096_050 Hb_003096_050 Hb_000056_330--Hb_003096_050 Hb_001190_060 Hb_001190_060 Hb_000056_330--Hb_001190_060 Hb_007072_020 Hb_007072_020 Hb_000056_330--Hb_007072_020 Hb_000975_150 Hb_000975_150 Hb_000056_330--Hb_000975_150 Hb_000926_130--Hb_007894_250 Hb_000926_130--Hb_007072_020 Hb_000500_110 Hb_000500_110 Hb_000926_130--Hb_000500_110 Hb_000926_130--Hb_003096_050 Hb_000926_130--Hb_001190_060 Hb_007894_250--Hb_003096_050 Hb_007894_250--Hb_000975_150 Hb_007894_250--Hb_001190_060 Hb_007894_250--Hb_007072_020 Hb_003096_050--Hb_001190_060 Hb_000816_120 Hb_000816_120 Hb_003096_050--Hb_000816_120 Hb_002311_240 Hb_002311_240 Hb_003096_050--Hb_002311_240 Hb_003096_050--Hb_000975_150 Hb_001190_060--Hb_000816_120 Hb_003992_250 Hb_003992_250 Hb_001190_060--Hb_003992_250 Hb_000140_160 Hb_000140_160 Hb_001190_060--Hb_000140_160 Hb_001190_060--Hb_002311_240 Hb_007072_020--Hb_000500_110 Hb_007520_040 Hb_007520_040 Hb_007072_020--Hb_007520_040 Hb_006355_030 Hb_006355_030 Hb_007072_020--Hb_006355_030 Hb_004800_170 Hb_004800_170 Hb_000975_150--Hb_004800_170 Hb_000390_260 Hb_000390_260 Hb_000975_150--Hb_000390_260 Hb_000975_150--Hb_001190_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.136616 0.665594 0.244749 0.659417 0.06403 0.0707733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.81721 6.44188 5.27839 46.1949 0.0837971

CAGE analysis