Hb_003992_250

Information

Type -
Description -
Location Contig3992: 147852-148737
Sequence    

Annotation

kegg
ID gmx:102664177
description EPIDERMAL PATTERNING FACTOR-like protein 2-like
nr
ID XP_006583125.1
description PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]
swissprot
ID Q1G3V9
description EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana GN=EPFL8 PE=1 SV=1
trembl
ID K7KZD9
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_250 0.0 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]
2 Hb_000039_070 0.168326643 transcription factor TF Family: MYB MYB21, putative [Theobroma cacao]
3 Hb_003538_020 0.1849766693 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
4 Hb_001190_060 0.1859571857 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
5 Hb_000976_070 0.1861524278 - - gulonolactone oxidase, putative [Ricinus communis]
6 Hb_000412_030 0.2009516118 - - glycosyl hydrolase family 35 family protein [Populus trichocarpa]
7 Hb_000390_260 0.2023286528 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
8 Hb_006478_180 0.2096576247 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
9 Hb_000445_020 0.2194355937 - - GABA-specific permease, putative [Ricinus communis]
10 Hb_012652_020 0.2226739248 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]
11 Hb_008092_090 0.2230055256 - - PREDICTED: uncharacterized protein LOC105637756 [Jatropha curcas]
12 Hb_003096_050 0.2248689653 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000010_120 0.2273510614 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
14 Hb_024621_030 0.227966547 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
15 Hb_001675_210 0.2290444453 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
16 Hb_132880_030 0.2374817287 - - hypothetical protein JCGZ_10325 [Jatropha curcas]
17 Hb_000019_220 0.2375000029 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
18 Hb_001410_090 0.2381996099 - - transferase, putative [Ricinus communis]
19 Hb_000488_040 0.238307793 - - unnamed protein product [Vitis vinifera]
20 Hb_004592_020 0.2395993699 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003992_250 Hb_003992_250 Hb_000039_070 Hb_000039_070 Hb_003992_250--Hb_000039_070 Hb_003538_020 Hb_003538_020 Hb_003992_250--Hb_003538_020 Hb_001190_060 Hb_001190_060 Hb_003992_250--Hb_001190_060 Hb_000976_070 Hb_000976_070 Hb_003992_250--Hb_000976_070 Hb_000412_030 Hb_000412_030 Hb_003992_250--Hb_000412_030 Hb_000390_260 Hb_000390_260 Hb_003992_250--Hb_000390_260 Hb_000039_070--Hb_000412_030 Hb_012652_020 Hb_012652_020 Hb_000039_070--Hb_012652_020 Hb_006446_070 Hb_006446_070 Hb_000039_070--Hb_006446_070 Hb_000614_340 Hb_000614_340 Hb_000039_070--Hb_000614_340 Hb_001114_290 Hb_001114_290 Hb_000039_070--Hb_001114_290 Hb_005747_040 Hb_005747_040 Hb_000039_070--Hb_005747_040 Hb_002534_080 Hb_002534_080 Hb_003538_020--Hb_002534_080 Hb_003891_060 Hb_003891_060 Hb_003538_020--Hb_003891_060 Hb_006478_180 Hb_006478_180 Hb_003538_020--Hb_006478_180 Hb_112082_030 Hb_112082_030 Hb_003538_020--Hb_112082_030 Hb_005511_050 Hb_005511_050 Hb_003538_020--Hb_005511_050 Hb_002758_040 Hb_002758_040 Hb_003538_020--Hb_002758_040 Hb_003096_050 Hb_003096_050 Hb_001190_060--Hb_003096_050 Hb_000816_120 Hb_000816_120 Hb_001190_060--Hb_000816_120 Hb_000056_330 Hb_000056_330 Hb_001190_060--Hb_000056_330 Hb_000140_160 Hb_000140_160 Hb_001190_060--Hb_000140_160 Hb_002311_240 Hb_002311_240 Hb_001190_060--Hb_002311_240 Hb_000976_070--Hb_000614_340 Hb_000976_070--Hb_000039_070 Hb_000976_070--Hb_006446_070 Hb_062904_010 Hb_062904_010 Hb_000976_070--Hb_062904_010 Hb_000976_070--Hb_000412_030 Hb_000412_030--Hb_062904_010 Hb_000412_030--Hb_012652_020 Hb_000412_030--Hb_006446_070 Hb_000412_030--Hb_000614_340 Hb_000010_120 Hb_000010_120 Hb_000412_030--Hb_000010_120 Hb_024621_030 Hb_024621_030 Hb_000390_260--Hb_024621_030 Hb_000975_150 Hb_000975_150 Hb_000390_260--Hb_000975_150 Hb_004195_180 Hb_004195_180 Hb_000390_260--Hb_004195_180 Hb_002006_140 Hb_002006_140 Hb_000390_260--Hb_002006_140 Hb_027472_230 Hb_027472_230 Hb_000390_260--Hb_027472_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.126818 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0959771 0.0754349 0 1.23497 0

CAGE analysis