Hb_000039_070

Information

Type transcription factor
Description TF Family: MYB
Location Contig39: 119370-120533
Sequence    

Annotation

kegg
ID tcc:TCM_030020
description MYB21, putative
nr
ID XP_007025853.1
description MYB21, putative [Theobroma cacao]
swissprot
ID Q7XBH4
description Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2
trembl
ID A0A061GF11
description MYB21, putative OS=Theobroma cacao GN=TCM_030020 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein myb4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000039_070 0.0 transcription factor TF Family: MYB MYB21, putative [Theobroma cacao]
2 Hb_000412_030 0.1060943224 - - glycosyl hydrolase family 35 family protein [Populus trichocarpa]
3 Hb_012652_020 0.1335493415 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]
4 Hb_006446_070 0.1530885658 - - Zinc-binding dehydrogenase family protein [Theobroma cacao]
5 Hb_000614_340 0.1616146026 - - Salutaridinol 7-O-acetyltransferase, putative [Ricinus communis]
6 Hb_001114_290 0.1637878706 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005747_040 0.1646445404 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
8 Hb_106528_010 0.1648041345 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
9 Hb_173102_010 0.1649902227 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
10 Hb_002551_010 0.1661395922 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_002997_010 0.1679544174 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
12 Hb_000264_250 0.1682726946 - - thioredoxin family protein [Arabidopsis thaliana]
13 Hb_003992_250 0.168326643 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]
14 Hb_169426_010 0.1695095812 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_005780_010 0.1695840141 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
16 Hb_180483_010 0.1697341068 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_011671_380 0.1704124608 - - Blue copper protein precursor, putative [Ricinus communis]
18 Hb_008367_020 0.1708634224 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 [Gossypium raimondii]
19 Hb_000563_070 0.1709612032 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
20 Hb_005747_020 0.1724145765 - - bacterial-induced peroxidase [Gossypium schwendimanii]

Gene co-expression network

sample Hb_000039_070 Hb_000039_070 Hb_000412_030 Hb_000412_030 Hb_000039_070--Hb_000412_030 Hb_012652_020 Hb_012652_020 Hb_000039_070--Hb_012652_020 Hb_006446_070 Hb_006446_070 Hb_000039_070--Hb_006446_070 Hb_000614_340 Hb_000614_340 Hb_000039_070--Hb_000614_340 Hb_001114_290 Hb_001114_290 Hb_000039_070--Hb_001114_290 Hb_005747_040 Hb_005747_040 Hb_000039_070--Hb_005747_040 Hb_062904_010 Hb_062904_010 Hb_000412_030--Hb_062904_010 Hb_000412_030--Hb_012652_020 Hb_000412_030--Hb_006446_070 Hb_000412_030--Hb_000614_340 Hb_000010_120 Hb_000010_120 Hb_000412_030--Hb_000010_120 Hb_008367_020 Hb_008367_020 Hb_012652_020--Hb_008367_020 Hb_001410_090 Hb_001410_090 Hb_012652_020--Hb_001410_090 Hb_000488_040 Hb_000488_040 Hb_012652_020--Hb_000488_040 Hb_012652_020--Hb_001114_290 Hb_012652_020--Hb_005747_040 Hb_106528_010 Hb_106528_010 Hb_012652_020--Hb_106528_010 Hb_006446_070--Hb_000614_340 Hb_176138_010 Hb_176138_010 Hb_006446_070--Hb_176138_010 Hb_006810_080 Hb_006810_080 Hb_006446_070--Hb_006810_080 Hb_006124_010 Hb_006124_010 Hb_006446_070--Hb_006124_010 Hb_022693_100 Hb_022693_100 Hb_006446_070--Hb_022693_100 Hb_000866_480 Hb_000866_480 Hb_006446_070--Hb_000866_480 Hb_000526_130 Hb_000526_130 Hb_000614_340--Hb_000526_130 Hb_009230_030 Hb_009230_030 Hb_000614_340--Hb_009230_030 Hb_003724_030 Hb_003724_030 Hb_000614_340--Hb_003724_030 Hb_001504_290 Hb_001504_290 Hb_000614_340--Hb_001504_290 Hb_000614_340--Hb_000866_480 Hb_173102_010 Hb_173102_010 Hb_001114_290--Hb_173102_010 Hb_001114_290--Hb_005747_040 Hb_001114_290--Hb_106528_010 Hb_002551_010 Hb_002551_010 Hb_001114_290--Hb_002551_010 Hb_002997_010 Hb_002997_010 Hb_001114_290--Hb_002997_010 Hb_000264_250 Hb_000264_250 Hb_001114_290--Hb_000264_250 Hb_005747_040--Hb_106528_010 Hb_005747_040--Hb_002551_010 Hb_005747_040--Hb_000264_250 Hb_000563_070 Hb_000563_070 Hb_005747_040--Hb_000563_070 Hb_005747_040--Hb_173102_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.162352 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0673746 0 0 1.05066 0

CAGE analysis